Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCATT_21060
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Entry
SCATT_21060 CDS
T02095
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scy
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Pathway
scy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCATT_21060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scy03400
]
SCATT_21060
Enzymes [BR:
scy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCATT_21060
DNA repair and recombination proteins [BR:
scy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SCATT_21060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
SLFN-g3_helicase
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEW94477
UniProt:
F8JWA9
LinkDB
All DBs
Position
complement(2249837..2253439)
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AA seq
1200 aa
AA seq
DB search
MSLSGLLDVVIEDPALAEAAEAARGGNRSRLDLVGPPGAQPFALAALAASSGRPLLAVTA
TGREAEDLTAALRSLLPPDSVVEFPAWETLPHERLSPRSDTVGRRLAVLRRLAHPSADDP
AAGPVKVVVAPVRSVLQPQVKGLGDLVPVSLRSGQRADLGQVVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRRRAAALAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVMPAGSVVV
ACDPERVRTRAADLVATSREFLEASWAATAMSSSTGEARSGKGGGGRRAGGEAPIDLGAA
SLWSLADVRDHARGTGTPWWSVSQFSADAEADEDDGDTLRLGLHAPETYRGDSARALADT
KGWLADGWRTVYVTEGHGPASRTVEVLGGEGIAARLDVELTAAPEPSVVHVACGSVEHGF
VAPALKLAVLTETDLSGQKSASKDMGRMPSRRRKTIDPLTLQPGDYIVHEQHGVGRYVEM
VQRTVQGATREYLLVEYAPAKRGQPGDRLFVPTDQLEQITKYVGGEAPTLHRLGGADWTK
TKARAKKAVKEIAADLIKLYSARMAAPGHAFGPDTPWQRELEDAFPYAETPDQLTTIAEV
KEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQAAVLVPTTLLVQQHYSTFTER
YAQFPVVVKALSRFQTDTEAKAVLEGLRDGSVDLVIGTHRLFSSETRFKDLGLVIVDEEQ
RFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGP
YEEKQIGAAIRRELLREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSETALEQ
VVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYA
YFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGF
DLYVRMVGEAVADYRAALESGAGAEEEAPLEVKIELPVDAHVPHDYAPGEQLRLQAYRAI
AAVNSEEDIASVREELADRYGKLPEPVENLLLVAGLRLLARRVGVTDITLQGSNIRFGPV
ELRESQELRLKRLHPRSVLKPAAKQVLVPRPSTGTIGGKPVVGRELLQWTAEFLTSVIGT
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgtccggtctgcttgacgtcgtcatcgaggatccggcgctggccgaggcggcc
gaggccgcgcgcggcggcaaccggagccgtctggacctggtggggccgccgggcgcgcag
cccttcgcgctggccgcgctcgccgcgagcagtggccggccgctgctcgcggtgaccgcc
accggccgcgaggccgaggatctgacggccgcgctgcgctcgttgctgccgcccgactcg
gtggtggagttcccggcctgggagacgctgccgcacgaacgcctctcaccacgttccgac
accgtcgggcgccgcctcgcggtgctgcgcaggctcgcccaccccagcgcggacgacccg
gcggccggcccggtcaaggtggtcgtcgccccggtccgctcggtgctccagccgcaggtc
aaggggctcggcgacctggtcccggtgagcctgcgcagcgggcagcgggccgacctgggg
caggtggtggacgcgctggccgccgccgcgtacgcccgcgtggagctggtggagaagcgc
ggcgagttcgcggtgcgcggcggcatcctggacgtcttcccgcccaccgaggaacatccg
ctgcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgcagcctggaggtggccgaacacggcctgtgggcgccgccctgccgtgagctgctg
ctcaccgacgaggtgcgccgccgcgccgccgcgctcgccgaggaccaccccgaactcggc
gaactcctcggcaagatcgccgagggcatcgccgtcgagggcatggagtccctcgccccg
gtcctggtggacgacatggagctgctgctggacgtgatgccggccggcagcgtggtcgtc
gcctgcgacccggaacgggtccgtacccgcgccgccgacctggtggccaccagccgcgag
ttcctggaggcgtcctgggcggccaccgcgatgtcatccagcacgggcgaagcccgttcc
ggcaagggtggtggtgggcgacgggcgggcggggaggctccgatcgacctgggcgccgcc
tccctgtggtcgctggccgacgtacgcgaccacgcccgcgggaccggcaccccgtggtgg
tcggtgagccagttctccgccgacgccgaggccgacgaggacgacggcgacaccctgcgg
ctgggcctgcacgcccccgagacctaccggggcgacagcgcccgcgccctcgccgacacc
aagggctggctcgccgacggctggcgcacggtctacgtcaccgagggccacggcccggcc
tcccgcaccgtcgaggtgctcggcggcgagggcatcgccgcccgcctcgacgtcgagctg
accgccgcccccgagccctccgtggtccacgtggcctgcggctcggtggaacacggcttc
gtcgcccccgccctgaagctggccgtcctcaccgagaccgacctgtccggccagaagtcg
gccagcaaggacatgggccggatgccgtcccggcgccgcaagaccatcgacccgctcacc
ctccagcccggcgactacatcgtgcacgagcagcacggcgtgggccggtacgtggagatg
gtccagcgcaccgtgcagggcgccacccgcgaatacctgctggtggagtacgcccccgcc
aagcgcggccagcccggcgaccggctcttcgtccccaccgaccagctggagcagatcacc
aagtacgtgggcggcgaggcccccaccctgcaccggctcggcggcgccgactggacgaag
accaaggcccgcgccaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtac
tcggcgcggatggccgcccccggccacgccttcggcccggacaccccctggcagcgtgag
ctggaggacgccttcccgtacgccgagacccccgaccagctcaccaccatcgccgaggtc
aaggaggacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtcggctac
ggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtgcaggacggcaagcaggcc
gccgtgctggtgcccaccacgctgctggtgcagcagcactactccaccttcaccgagcgg
tacgcgcagttcccggtggtggtcaaggcgctctcccggttccagaccgacaccgaggcc
aaggccgtgctggaagggctgcgggatggctcggtcgacctggtgatcggcacccaccgg
ctgttctcctccgagacccggttcaaggacctcgggctggtcatcgtcgacgaggagcag
cgcttcggcgtcgagcacaaggagcagctgaagaagctgcgggccaacgtggacgtgctc
accatgtcggccaccccgatcccgcgcaccctggagatggcggtcaccgggatccgcgag
atgtccaccatcaccaccccgccggaggagcgccacccggtgctcaccttcgtcggcccc
tacgaggagaagcagatcggcgccgccatccggcgtgaactgctccgcgagggccaggtc
ttctacatccacaaccgggtggagtccatcgaccgggccgccgcccggctgcgggagatc
gtccccgaggcgcggatcgccaccgcgcacggccagatgtccgaaacggcgctggaacag
gtcgtggtggacttctgggagaagaagttcgacgtgctggtctccaccacgatcgtggag
tccggcatcgacatctccaacgccaacacgctcatcgtcgaacgcggcgacaacttcggc
ctcagccagctccaccagctgcgcggccgggtcggccggggccgggaacgcggctacgcc
tacttcctgtacccgccggagaagccgctcaccgagaccgcccacgagcggctggccacc
atcgcccagcacaccgagatgggcgcgggcatgtacgtggccatgaaggacctggagatc
cgcggcgccggaaacctgctcggcggtgagcagtccggccacatcgccggggtcggcttc
gacctgtacgtgcgcatggtcggcgaggcggtcgccgactaccgggcggcgctggagtcc
ggggcgggcgccgaggaggaggcgccgctggaggtcaagatcgagctgccggtcgacgcc
cacgtcccgcacgactacgcccccggcgagcagctgcgcctccaggcctaccgcgccatc
gcggccgtcaactccgaggaggacatcgcctcggtacgggaggaactcgccgaccggtac
ggcaagttgcccgagccggtggagaacctgctgctcgtggccggcctgcggctgctggcc
cgccgggtcggggtcaccgacatcaccctgcagggctccaacatccgcttcgggccggtg
gagttgcgcgagtcgcaggagctgcgcctcaagcggctccacccgcgcagcgtcctcaag
cccgccgccaagcaggtgctggtgccgcgtccgtccaccggcacgatcggcggcaagccg
gtggtcggccgggaactgctccagtggacggcggagttcctgacctcggtgatcggcacc
tga
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