Scytonema sp. HK-05: SAMD_41540
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Entry
SAMD_41540 CDS
T09974
Name
(GenBank) RNA polymerase sigma-37 factor
KO
K03090
RNA polymerase sigma-B factor
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyt03021
]
SAMD_41540
Transcription machinery [BR:
scyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMD_41540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Sigma70_r4
HTH_7
HTH_23
Sigma70_ECF
HTH_Crp_2
HTH_24
LacI
Motif
Other DBs
NCBI-ProteinID:
BAY46542
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All DBs
Position
4809791..4810564
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AA seq
257 aa
AA seq
DB search
MTASQFSIQFDGMELLRLYHQNRCIKTRNQLVQLHTGLVRKMAHKFSHQCNEPYEDLEQI
GYFGLIRAIERFDPRQGYAFSSFAIPYIRGEMLHFLRDRGTLLKIPRRWQELYNEGQRVR
KELAGTLGRPPKDSEIASVLKVSVQEWQETKLAVQNRMPLSLDATIVQNIDCQITLGEAL
PCQRSVAVQQQDEERQQLQGAINMLEEKPRMAVEMVYLKELSRKDTAKNIGTSPMTVTRY
LQKGVQDLVSMLRPQAV
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaagtcagttttctatccaatttgatggtatggaattattacggttataccat
caaaatcgttgtattaaaactcgtaatcaacttgtacaattacatactggcttagtacga
aaaatggctcataaattcagtcatcaatgcaatgagccatatgaagatttagagcaaatt
ggttattttggtttgataagagcaattgagcgctttgatccaagacaaggatatgctttt
agttcgtttgccataccctacattcggggtgaaatgctgcactttttacgcgatcgcggt
accctattaaagattcctcgccgttggcaagaactctataatgaggggcaaagagttcgc
aaagaattggctgggactttaggtcgtcctcccaaagattcagaaattgcaagcgttctc
aaggtatctgtccaagaatggcaagaaaccaaattagctgttcaaaaccgtatgcctttg
agtttggacgctacgatagttcaaaacattgattgccaaattaccctaggtgaagcactt
ccttgtcaacgttctgttgctgtgcaacaacaagacgaagaacggcaacaacttcaagga
gcaataaatatgctagaagaaaagccccgcatggcagttgaaatggtgtatttgaaggaa
ctttctcgcaaagataccgctaagaatattggcacgagtccaatgacagtgacacgatat
ttgcaaaagggagttcaagatttagtctctatgttaagaccgcaagcggtgtag
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