Saccharophagus degradans: Sde_0924
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Entry
Sde_0924 CDS
T00335
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sde
Saccharophagus degradans
Pathway
sde03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sde_0924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sde03021
]
Sde_0924
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_0924
Enzymes [BR:
sde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sde_0924
Transcription machinery [BR:
sde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sde_0924
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sde_0924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ABD80186
UniProt:
Q21M93
LinkDB
All DBs
Position
1187680..1191765
Genome browser
AA seq
1361 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPDVMEVPYLLAIQLDSYRKFTQADTPFDQRKDMGLHAAFKSI
FPIVSYSGNAALEYVSYALGKPVFDVKECVLRGATYAVPLRVKVRLIIYDKDSSSKAIKD
IKEQEVYMGEIPLMTDNGTFVVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDLVFVRIDRRRKLPASILLRALGYTTEQMLDMFYETSKFGLTETG
ECVLELVPSRLRGDVTTFEIKDKDGNLIVEDGRRITARHIRQLEKAGVTELSVPHEYMVG
RALAKDIINAESGEVLFECNTEITDEVLAELVKSGVKEFETLYTNELDCGPFISDTLRSD
PARTQLEALVEIYRMMRPGEPPTKESAETLFQNLFFSSERYDLSAVGRMKFNRRLGRDSE
VGSGTLSNEDIVDVLKTLIDIRNGKGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERA
VKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNSYGFLESPHRKV
VDGKVTDEIEYLSAINEAKFVIAQASAAQNENGELTEELVSVRFQNEFTLKGPSEVQYMD
VSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKAQKPLVGTGMERNVAADSGV
CVVAKRGGVIERVDAARIVVRVADDEVEAGEAGVDIYNLTKYTRSNQNTCINQRSIVRTG
EKVSRGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ
ELTCIARDTKLGSEEITADIPNVGEGALSKLDESGIVYVGAEVASGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSSVKGTVIDVQVFTRDGLEKDQRSRDIEKAQLD
QIRKDLNEEYRIVQGATFERLRAALVGNTAMTGKGVVKGQPVTDEMLDELSHDDWFKIRM
NDDVLNEQIDAAEVALAERRKELDDRFEDKKGKLETGDDLAPGVLKIVKVYLAIKRRIQP
GDKMAGRHGNKGVISVIMPVEDMPYDENGNPIDIVLNPLGVPSRMNVGQVLEMHLGLAAK
SLGEKIDEMLKQQKAVAEIRQFLDQIYNQIGESYKAEELDTFSDDEIIELANNLRDGVPM
ATRAFDGAKEKEIKQLLTLGGMPDSGQMTLFDGRTGDPFQRPTTVGYMYMLKLNHLVDDK
MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT
KMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGINIELEQDN
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgaaaggattttggcaagttgccagac
gtcatggaagtgccataccttctggcgattcaactagattcctacagaaaatttacgcag
gctgatacccctttcgatcaaagaaaggatatgggcttgcacgctgcatttaaatctata
tttccaatagtgagctattcaggtaatgcagcacttgagtatgtcagttatgccctaggt
aagcccgtttttgacgtaaaagaatgtgttttgcgtggcgcgacctatgcagtgccttta
cgcgttaaagttcgtttgattatctacgataaagattcgtccagtaaggcgatcaaggat
atcaaagagcaagaagtctacatgggcgaaattccgcttatgacagacaatggtacattc
gtagtgaatggtaccgagcgagtaattgtatctcagttacacagatctcctggtgtgttt
ttcgagcacgacaaaggtaagacccactcttcgggcaagttgctctactctgcacgcgtt
atcccttaccgtggctcatggttagacttcgagttcgaccctaaagatctagttttcgta
cgtattgaccgtcgtcgtaagttgcctgcgtctattttgttgcgcgcattgggctatacc
accgagcaaatgctcgatatgttctacgaaacaagcaagttcggtcttaccgaaactggt
gagtgcgtacttgaattggttccatcgcgtttgcgcggtgatgtaacaacgtttgaaatt
aaagataaagacggcaatttaattgttgaagatggccgtcgtattactgctcgtcatatt
cgtcagttggaaaaagctggtgtaaccgagctaagtgttccgcacgaatatatggttggt
cgcgcattagcgaaagatattattaatgcggaatccggcgaagttctatttgaatgtaac
accgaaatcacagacgaagttcttgcggagcttgttaagtctggcgttaaagaatttgaa
acgttgtacaccaacgaattagattgcggtccgtttatttctgacactttgcgcagcgac
cctgctcgcactcagcttgaagcgttggtagaaatctaccgcatgatgcgcccgggtgag
ccgccaacaaaagagtctgcagaaacactgttccaaaacttgttcttcagctctgagcgc
tatgacctttctgctgttggtcgaatgaagttcaaccgccgtttgggtcgtgattcagaa
gttggttctggaacgctatctaatgaagatatagttgatgtattaaaaacgcttatcgac
attcgcaacggtaaaggcgtggtggatgatatcgatcacctcggtaaccgtcgtgtacgt
tctgttggcgaaatggccgagaaccaattccgtgttggtttagttcgtgtagagcgcgct
gttaaagagcgtctatctatggctgaaagcgaaggcttaatgccccaagatcttattaac
gctaagcctgtggctgctgctgttaaagagttctttggctcgagtcagctatctcagttc
atggatcaaaacaacccactgtcagaagttacgcacaaacgtcgtgtttccgcattaggc
cctggtggtttgacgcgtgagcgtgcaggctttgaggtgcgagacgtacacccgactcac
tacggtcgtgtatgtcctattgaaacacctgaaggtccaaacattggtttgattaactcg
ttggctacctatgcgcgtaccaacagttacggtttcttagaaagtcctcaccgcaaggta
gttgacggtaaagttaccgatgaaatcgaatacctatcagctattaacgaagctaaattc
gtaattgcacaggcatctgctgcgcaaaacgaaaatggcgaattaacagaagagttggta
tcggtacgattccaaaatgaatttaccttaaaagggccaagcgaagttcagtacatggac
gtgtctccacgtcaggttgtatctgttgctgcgtctcttatcccgttcctagagcacgat
gatgctaaccgtgcattgatgggatcaaacatgcagcgtcaagctgtaccaacactaaag
gcgcaaaagccgttagtgggtacaggtatggagcgcaatgttgctgccgactctggtgta
tgtgttgttgctaaacgcggcggtgttatcgagcgtgttgatgctgctcgcattgttgtg
cgtgtagccgacgacgaagttgaagcgggtgaagcaggtgtagatatttacaaccttacc
aaatacacccgttcaaaccagaatacgtgtattaatcagcgttcaattgtacgcactggt
gagaaagtatctcgcggtgacattcttgcagacggcccatccgtagatttgggtgagttg
gcacttgggcaaaatatgcgtatcgcatttatgccttggaatggttacaactttgaggat
tcgatcctcgtttctgagcgtgtagttcaggaggatcgttttactactattcacattcag
gaattaacctgtattgctcgtgacaccaaattgggtagcgaagaaattacagcggatatt
ccaaacgtaggtgaaggtgctctatccaagttggatgagtccggtattgtttacgtgggt
gcggaagtagcttctggcgatattcttgttggtaaagttacgcctaaaggtgaaacgcag
ctaacaccagaagaaaagctcttacgtgcaattttcggtgagaaagcgtccgacgtaaaa
gatacttcattgcgcgtgccttcaagtgttaagggtacggttatagatgtgcaggtattt
acgcgcgatggtttagaaaaagaccagcgttcacgtgatatcgaaaaagcacagctagat
caaattcgtaaggacttaaacgaagagtaccgtattgttcaaggcgctacttttgagcgt
ttacgcgctgcacttgtgggtaataccgcaatgacaggcaagggcgttgttaaagggcag
ccggtaacggatgagatgctagacgagcttagccatgatgattggttcaagattcgtatg
aatgacgatgtgctcaatgagcaaatcgatgccgctgaagttgctttggcagagcgtcgt
aaagagctcgatgatcgcttcgaagataaaaaaggcaagttggaaaccggtgatgatctg
gctccaggtgtgttgaaaattgttaaggtttacttggcaattaaacgacgcattcagcct
ggtgataagatggccggtcgtcacggtaacaagggtgttatctctgtgatcatgcctgtt
gaagatatgccatacgacgaaaatggtaaccccattgatatcgtattgaacccgcttggt
gttccttctcgaatgaacgttggtcaggttttagagatgcacttaggtcttgcagctaag
tcgctaggtgaaaagattgatgaaatgttgaagcagcaaaaagctgttgcagaaattcgc
cagttcttggatcaaatctataaccaaataggcgagtcgtataaagctgaagagctcgat
acgtttagcgacgacgaaattatcgagttagctaacaacttgcgtgacggcgtgcctatg
gctacccgtgcgttcgatggtgctaaagagaaagaaattaagcaattgttaaccttgggt
ggtatgccggattcaggtcagatgactttgtttgatggtcgtactggtgatccgttccag
cgtccaacaactgtgggctatatgtatatgctcaagttgaaccacttggttgacgataaa
atgcacgcccgttcgactggttcctacagccttgttactcagcagccgctgggtggtaaa
gcgcagtttggtggtcagcgatttggtgagatggaggtgtgggccctcgaagcatatggt
gcagcgtatacgttgcaagaaatgctaaccgttaaatcggatgacgtggccggtcgtact
aagatgtataaaaacatcgtagacggtgaccaccgcatggagcctggcatgcctgagtcc
tttaacgtattggttaaagagattcgctcactcggtattaatatcgagctagagcaggac
aactaa
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