Streptomyces deccanensis: L3078_28005
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Entry
L3078_28005 CDS
T08215
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sdec
Streptomyces deccanensis
Pathway
sdec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L3078_28005 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdec03021
]
L3078_28005 (rpoB)
03400 DNA repair and recombination proteins [BR:
sdec03400
]
L3078_28005 (rpoB)
Enzymes [BR:
sdec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L3078_28005 (rpoB)
Transcription machinery [BR:
sdec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L3078_28005 (rpoB)
DNA repair and recombination proteins [BR:
sdec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L3078_28005 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ULR52808
LinkDB
All DBs
Position
6263198..6266683
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNTAWQSRVEE
ALENGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKDRDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTHKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGAEAPLDAGVLTVEDVISTIKYLVKLHAGETETAADNGQTIVVETDDIDHFG
NRRLRSVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFVETPYRRVTDGVVTDEVDYLTADEEDRFVIAQANATLDEGMRF
TENRVLVRRRGGEVDYVPGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIKSESPLVGTGMEYRSAVDAGDVVKAEKAGVVQEVSADYITTTNDDGTYITYRLAK
FARSNQGTSVNQKVIVNEGDRIIEGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLGEDWAKRLQAIGADSVAPGTNVATP
VFDGAREDELAGLLQHTIPNRDGERMVQPTGKARLFDGRSGEPFPDPISIGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgaccgcgaatacgaacaacggcgccagcaccgccccg
ctgcgcatctcttttgcaaagatcaaggagcctctcgaggttcccaacctgctcgcgctg
cagaccgagagctttgactggctgctcgggaacaccgcctggcagagtcgggtcgaggag
gccctggagaacggacaggacgtccccaccaagtccggtctggaggagatcttcgaggag
atctccccgatcgaggacttctccgggtcgatgtcgctgacgttccgcgaccaccgcttc
gagccgccgaagaacagcatcgacgagtgcaaggaccgcgacttcacgtacgcggccccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgacccacaagggcaccttcgtgatcaacggcaccgag
cgtgtcgtcgtgtcgcagctggtccgctcgcccggtgtctacttcgactcctccatcgac
aagacctccgacaaggacatcttctccgccaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtgcgtatcgaccgcaagcgcaagcag
tccgtgaccgtcctcctcaaggcactcggctggaccaccgagcagatcctggaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccaggggcaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccccccacgcgtgaggccgcg
cagacgctgctcgagaacctctacttcaaccccaagcgctacgacctcgcgaaggtcggc
cgctacaaggtcaacaagaagctgggtgcggaggcgccgctcgacgcgggcgtcctgacc
gtcgaggacgtcatctcgacgatcaagtacctggtgaagctgcacgcgggcgagaccgag
acggccgcggacaacggccagacgatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgtcgtctgcgtagcgtcggcgagctcatccagaaccaggtccgtacgggtctggcg
cgtatggagcgagtcgtccgcgagcgcatgacgacccaggacgtcgaggcgatcacgccc
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagaacaacccgctgtcgggtctgacgcacaagcgtcgt
ctctcggcgctgggtcccggtggtctgtcccgtgagcgggccggcttcgaggtccgtgac
gtgcacccctcgcactacggccgcatgtgcccgatcgagacgcccgaaggcccgaacatc
ggtctgatcggttcgctcgcctcctacggccgcgtcaacgcgttcggtttcgtggagacg
ccgtaccgccgggtcaccgacggtgtcgtcaccgacgaggtcgactacctgacggccgac
gaagaggaccgcttcgtcatcgcgcaggccaacgccacgctcgacgagggcatgcgcttc
accgagaaccgcgtcctggtccgccgccgtggcggcgaggtcgactacgtccccggtgac
gacgtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgccatgatc
cccttcctggagcacgacgacgccaaccgtgccctcatgggcgcgaacatgatgcgtcag
gccgtgccgctcatcaagagcgagtccccgctcgtcggcaccggcatggagtaccgctcc
gccgtcgacgccggcgacgtggtcaaggccgagaaggcgggtgtggtccaggaggtctcc
gcggactacatcaccaccaccaacgacgacggcacgtacatcacgtaccgcctggccaag
ttcgcccgctccaaccagggcacctcggtcaaccagaaggtcatcgtcaacgagggcgac
cggatcatcgagggccaggtcctggccgacggtccggccaccgagaacggcgagatggcc
ctcggcaagaacctgctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgcatcggtgcc
gaggtcgtcgccggcgacatcctcgtcggcaaggtcacgcccaagggtgagaccgagctg
acccccgaggagcgcctgcttcgcgcgatcttcggtgagaaggcccgtgaggtccgtgac
acctcgctgaaggtgccgcacggcgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgtgaggagggcgacgagctgccgccgggcgtgaaccagctggttcgtgtctacgtggcg
cagaagcgcaagatcacggacggtgacaagctcgccggccgccacggcaacaagggtgtc
atctccaagatcctgccgatcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtgccgtcccgaatgaacccgggacaggtgctggagatc
cacctcggctggctcgccagccgcggctgggacgtctccggcctcggcgaggactgggcg
aagcgtctgcaggccatcggcgccgactccgtcgcccccggcaccaacgtcgcgaccccg
gtcttcgacggtgcccgtgaggacgagctggccggcctgctccagcacaccatcccgaac
cgcgacggcgagcgcatggtgcagccgaccggtaaggcgaggctgttcgacggccgctcc
ggtgagccgttcccggacccgatctcgatcgggtacatgtacatcctgaagctccaccac
ctggtcgacgacaagctgcacgcccggtcgaccggtccgtactcgatgatcacccagcag
ccgctgggtggtaaggcccagttcggtggccagcgcttcggtgagatggaggtgtgggcg
ctggaggcttatggcgccgcgtacgccctccaggagctgctgaccatcaagtccgacgac
gtcaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacattcccgagccc
ggcatccccgagtccttcaaggttctcatcaaggagatgcagtccctgtgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttc
cgcgctgcggaggagcttggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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