Shewanella decolorationis: D0436_01290
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Entry
D0436_01290 CDS
T09167
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D0436_01290 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdeo03021
]
D0436_01290 (rpoB)
03400 DNA repair and recombination proteins [BR:
sdeo03400
]
D0436_01290 (rpoB)
Enzymes [BR:
sdeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D0436_01290 (rpoB)
Transcription machinery [BR:
sdeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D0436_01290 (rpoB)
DNA repair and recombination proteins [BR:
sdeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D0436_01290 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QDZ89198
UniProt:
A0A5B8QS70
LinkDB
All DBs
Position
complement(4738464..4742501)
Genome browser
AA seq
1345 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMT
LVPERLRGETASYDIKDAEGTVLVEAGRRVTARHIRQLEKTNTTELEVPVEYIVGKYAAQ
DYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDPTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGV
LSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVI
TDEVEYLSAIEEGRYVIAQANIEVDSQGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLKSEKPLVGTGIERTLAVDSGVVVAAK
RGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEMHIAQARKD
LGEEFKILEEGVLSRARNLLLSAGFTEAQIAALPRKDVLVQVIDDETKQTELEQLAEQHE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
NPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGNKIAAMLEDQREKG
LAEVRSYIKQVYELGDEVQQRVDIDSFTDDELLRLANNLKGGIPVATPAFDGAKEKEIKQ
MLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ
PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQP
GMPESFNVLLKEIRSLGINIELDQE
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagactttggtaagcgtccacag
gtgttggatattccttaccttttgtctattcagttagactcttttaagaagttcaccgat
caagatcctaccggtgagcgcggtttagaagccgccttccgtagcgtttttcccatcaag
agcttttctggtaattcagaactgcaatacgtcagctataagcttggcgagcctgttttt
gatgtgaaagagtgtcagatccgtggtgttacatattcagctccactgcgcgttaaatta
cgcatggtgttgtatgatcgtgaagcagcggccggcactgtaaaagatattaaagaacaa
gaagtctacatgggtgatatcccattgatgactgacaacggtacctttgtgatcaacggt
actgagcgtgtaatcgtttctcaattacaccgtagcccaggcgtattcttcgatcacgac
cgtggtaaaacccactcatcaggtaaggtgctgtataacgcacgtatcattccttaccgt
ggttcatggttagactttgaattcgatcctaaagatgcactgttcgtacgtattgaccgt
cgtcgtaaattacctgcgaccatcattctgcgcgcattagagtattctactcaagagatc
ctcgacctgttcttcgaacgcgttgaattcaagatcaagaaagatactctggttatgacc
ttagtacctgagcgtctgcgtggcgaaaccgccagctacgacatcaaggatgctgaaggt
accgtattggtagaagcgggccgtcgcgtgactgcacgtcatattcgtcaactcgaaaaa
accaacaccactgaactcgaagtaccagttgagtacatcgtgggcaaatatgctgctcaa
gattacatcgatccggacacgggtgaagtattagtttctgctaacagtgaaatcagctta
gaagacttagcgaaattatcactggcaggcatcaaagagctaagcacgttgtacatcaac
gagctagaccacggtgcttacatctctgacactctgcgtatcgatccaacgactaaccgc
ttagaagcgttagttgagatctaccgcatgatgcgtcctggtgagccaccaaccaaagat
gctgcagaagccctgttccaaaacttattcttcagcgaagaacgttatgacctgtctaaa
gtaggtcgtatgaagttcaaccgtcgtctcagcattcctgatgacgaaggtagcggcgta
ctgtctaaagaagacatcgttgcagtaatgaagaacatcattcacatccgtaacggcttc
gacgaagtggacgatatcgaccacttaggtaaccgtcgtattcgttctgtgggtgaaatg
gctgaaaaccaattccgtgttggtctggtccgtgttgagcgcgccgtgcgtgaacgtctg
tcattaggcgatctgaacgagctgatgccacaagacttaatcaacgctaagccaatttct
gctgcagtgaaagagttcttcggttcttctcagctgtcacaattcatggaccaaaacaac
ccgctgtcagaagtaacgcacaagcgtcgtatttctgctctaggcccaggtggtttgacc
cgtgagcgtgcaggcttcgaagtccgcgacgtacacccaacgcactacggtcgtttgtgt
ccaattgagacccctgaaggtccaaacattggtctgatcaactcattagcaagctttgcc
cgtactaactcatatggcttcttagaaacaccataccgcaaagtggtagacggtgtgatc
actgacgaagtggaatacttgtcagcgattgaagaaggtcgttacgtgattgcacaggcg
aacatcgaagttgactctcagggccgcatggttgaagaacagatcgcatgtcgtcacaaa
ggtgaatctacctttatgcgcgcgtctgacattcaatacatggacgtatcgccacaacag
atcatctctgttgctgcgtcactgatcccgttcttagaacacgacgacgcgaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagcggtaccaacgctgaaatcagagaagcctctg
gtcggtacaggtattgagcgcacgctagctgtggattcaggcgtagtagtcgccgctaaa
cgtggcggtgtgatcgactacgttgatgcgagccgtatcgtagttaaagtaaatgaagac
gagctgcgcccaggcgaagccggtatcgacatttacaacctgactaaatacacccgttct
aaccaaaacacttgtatcaaccaacgtccttgctgttctgttggtgagccagtagttcgt
ggtgacgtgttagcagacggtccgtctactgacttaggtgacttagcccttggccagaac
atgcgtatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttaatttct
gagcgtgttgcacaggaagaccgtttcaccactatccacattcaagagctgtcttgtatc
gctcgtgataccaagctgggtagcgaagaaatcactgctgacattccaaacgtaggtgaa
tctgctctgtcgaaactcgacgagtcaggtatcgtttacattggtgcagaagtgaagggc
ggtgacattctggtaggtaaagtgacgccaaaaggcgagactcaactgacgccagaagag
aagttactgcgcgccatcttcggtgagaaagcgtctgatgtgaaagacagctcactgcgt
gtacctaactctgttaaaggtaccatcatcgacgttcaggtatttacccgtgacggcgtt
gagaaagacaaacgcgccattgaaatcgaagaaatgcacattgcccaagctcgtaaagac
ttaggcgaagagttcaagatccttgaagaaggcgtattgagccgtgcgcgcaacttatta
ttaagtgccggtttcactgaagcacaaatcgcagcattgccacgtaaagatgtattggtt
caagttattgacgatgaaaccaaacaaactgagcttgagcaattagctgaacagcatgaa
gagctgaaagcagacttcgataagaagtttgaaatcaaacgtcgcaagatcacccaaggt
gatgacttggcaccaggcgtactgaagatcgttaaggtttacttagcggttaaacgtact
atccaacccggtgacaagatggcgggtcgtcacggtaacaagggtgttatctctaagatt
aacccaattgaagacatgccgtacgacgagcaaggcaaccctgtggacatcgtattgaac
ccgctaggcgttccatcacgtatgaacatcggtcaggttcttgaagttcacttaggtgct
gctgctaaaggtattggtaacaagattgctgccatgctggaagatcagcgcgagaaggga
cttgcagaagttcgtagctacatcaagcaagtgtacgaattaggtgacgaagtgcagcag
cgcgttgacatcgattcattcactgacgatgagttactgcgcttagcgaacaacctgaaa
ggcggtatcccagttgctacgccagccttcgacggtgctaaagagaaagagatcaagcag
atgcttgagcttgcaggcttgccaacctctggtcagctgaaattatttgatggtcgtacc
ggtaacgaatttgagcgtccagtaactgtaggttacatgtatatgctcaaactgaaccac
ttagttgacgataagatgcacgcccgttctaccggttcgtacagcttagtgactcaacaa
ccactgggcggtaaagctcagttcggtggtcagcgtttcggtgagatggaagtgtgggca
ctcgaagcatacggtgccgcttatacgcttcaagaaatgctcaccgtgaaatcggatgac
gttaacggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcagcct
ggcatgccagagtccttcaacgtattactgaaggagatccgttcactcggtatcaacatc
gagttggatcaggaataa
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integrated database retrieval system
