Steroidobacter denitrificans: ACG33_05220
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Entry
ACG33_05220 CDS
T04296
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sdf
Steroidobacter denitrificans
Pathway
sdf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACG33_05220 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdf03021
]
ACG33_05220 (rpoB)
03400 DNA repair and recombination proteins [BR:
sdf03400
]
ACG33_05220 (rpoB)
Enzymes [BR:
sdf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACG33_05220 (rpoB)
Transcription machinery [BR:
sdf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACG33_05220 (rpoB)
DNA repair and recombination proteins [BR:
sdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACG33_05220 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AMN46505
UniProt:
A0A127FA76
LinkDB
All DBs
Position
1184307..1188479
Genome browser
AA seq
1390 aa
AA seq
DB search
MAYSFTEKKRIRKGFGKQGSILDVPYLLAIQLDSYRKFLQAEVPEARRSEAGLHAAFKSV
FPIVSYSGNALLEYVSYRLGIPVFDVKECQMRGLTYAAPLRVKVRLIVYDKETSTPTKKT
VKDIREQEVYLGEMPLMTDNGTFVVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDCVYARIDRRRKLPVTIILRALGYTEEQMLDIFFEKNTYYLT
KDRIEFELIPARLRGETATFPIRIGEEVIVEEGRRVTARHVRALEQKGVSRLEVPKEYLI
GKVLAHDVFDTGTGEILAKANEILTLAIVDKLIEADIEQVHALYVNDLDRGPYISDTLRI
DPTRTRLEALVEIYRMMRPGEPPTKDAAENLFQNLFFNPERYDLSAVGRMKFNRRVHREA
ITGSGVLYDHAHFSKRTDDFSKGLVEQYGETSDIIDVIKELCDIRNGNGLVDDIDHLGNR
RVRSVGEMAENAFRIGLVRVERAVKERLTLAESEGLMPQEMINAKPVAAAVKEFFGSSQL
SQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL
INSLSVYARTNDYGFLETPYRKVVDGKVTDEIDYLSAIEESQYVIAQANAVLNEASEFAD
DLVSCRHLNEFMLSSPDRIQYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVP
TLRAETPLVGTGMERAVAIDSGVTVVARRGGVVDSVDASRIVVRVHDAETSADEAGVDIY
SLTKYTRSNQNTCINQRPLVKAGDVIARGDVLADGPSTNLGELALGQNLLVAFMPWNGYN
FEDSILISERVVHDDRFTTIHIEELTCVARDTKLGPEEITADIPNVGDVALAKLDEAGIA
FIGAEVKAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPPGMDGTVIDV
RVFTRDGVEKDSRALSIEKFELEKVRKDLEDQRRILEDDLFQRVRAVLLGKAAEAGPKKF
KPGSLVDEAYLSELPREQWLEIRLRDEDDNAAVERTAERLKLQRKEFEKRYEEKRAKITA
GDDLAPGVLKMVKVYLAVKRRVQPGDKMAGRHGNKGVVSTIIPVEDMPYTEDGTPVDIVL
NPLGVPSRMNIGQILETHLGWAAKGIGLKIGRMLDAMSDGPGHGVGRLREFLDEVYNKTG
GQKENLEALDDAEILSLADNLRHGVPMATPVFDGASEQEIKHMLALADLPSSGQTTLFDG
RTGERFERSVTVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGASYTLQEMLTVKSDDVTGRTQMYKAIVDGNHEMKAGMPESFNVLVKEIRSLGI
NMELEQESEK
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcgttcaccgagaaaaagcgcatccgcaagggtttcggcaagcagggcagt
atcctcgacgtgccctatctgctggcgatccaactggattcgtaccgcaaattcctgcaa
gcggaggtgccggaggcgcgccgcagcgaagccggactgcacgctgcattcaaaagcgtg
tttccgatcgtcagctattccggcaatgcgctgctcgagtatgtgagctatcggctggga
attccggtgttcgacgtcaaggaatgccagatgcgcggtctgacgtacgccgcgccgctg
cgcgtcaaggtgcgcctgatcgtttacgacaaggaaacgtcgactccgaccaagaagacg
gtcaaggatatccgcgagcaggaagtctatctgggtgaaatgccgctcatgaccgataac
ggcacgttcgtcgtgaacggtaccgagcgggtcatcgtctcccagctgcatcgcagcccc
ggtgtatttttcgatcacgaccgcggcaagacccacagttcgggcaagctgctgttttca
gcgcgcatcattccgtatcgcggttcctggctggacttcgagttcgacccgaaggactgc
gtgtatgcgcgtatcgatcggcgccgcaagctgccggtcacgatcatcctgcgggcgctc
ggctacaccgaggagcagatgctcgacatctttttcgaaaagaacacctactacctgacc
aaggacaggatcgagttcgagctcattcccgcgcgtctgcgcggcgagaccgcgacgttt
ccgatccgcatcggcgaggaggtcatcgtcgaggaaggccgccgcgtcaccgcccgtcat
gtgcgcgccctggagcaaaagggcgtgtcgcgcctggaagtgccgaaggaatacctgatc
ggcaaggtactcgcgcacgacgtgttcgacaccggtacaggcgagatcctggcgaaggcc
aacgagattctgacgctggccatcgtcgataagctgatcgaggcggacatcgaacaagtg
cacgcgctgtacgtgaacgatctggatcgcggtccgtatatctccgacaccctgcgcatc
gatccgacccgcacccgcctggaggcgctggtcgagatctatcgcatgatgcgtcccggc
gaaccgcccaccaaggatgcggccgagaatctgtttcagaacctgttcttcaatccggaa
cgctatgatctgtcggccgtgggccgcatgaagttcaatcgccgcgtgcatcgcgaagcg
atcaccggcagcggcgttctgtatgaccatgcgcacttttccaagcgtaccgacgatttc
tcgaaaggactcgtggagcagtacggagagacatccgacatcatcgatgtcatcaaggaa
ctgtgcgacatccgcaacggcaatggtctggtcgacgacatcgatcatctcggcaaccgc
cgcgtccgttccgtgggtgaaatggcggagaatgccttccgcatcggtctggtgcgtgtc
gagcgggccgtcaaggaacgcctgaccctggcggagtccgagggcctgatgcctcaggaa
atgatcaacgccaagccggtcgcggcggcggtgaaggagtttttcggctcctcgcagctg
tcgcagttcatggatcagaacaatccgctctcggaagtcacccataaacgccgcgtttcc
gcgctcggcccaggcgggctgacgcgcgagcgggcgggcttcgaggttcgtgacgtgcat
ccgacgcactatggccgcgtgtgcccgatcgaaacgccggaaggcccgaacatcggcctg
atcaattccctgtcggtctacgcgcgcaccaacgactacggctttctggagacgccgtat
cgcaaggtcgtggacggcaaggtgaccgacgaaattgactatctgtcggcaatcgaggaa
agccagtacgtcatcgcccaggcgaacgcagtactgaacgaggcgtccgaattcgccgat
gacctggtgtcctgccggcacttgaacgagttcatgctgtcgagtcccgacaggatccag
tacatggatgtatcgcccaagcagatcgtctcggtggcggcttcgctgatcccgttcctg
gagcacgacgacgccaatcgcgccttgatgggctcgaacatgcagcgccaggcagtgccg
accttgcgcgccgagacgccgctggtgggtaccggcatggagcgcgcggtcgccatcgat
tcgggcgtgacggtcgtggcgcggcgcggcggcgtcgtcgactccgtcgatgcctcgcgt
atcgtggtgcgcgtgcacgatgccgagacctcggccgacgaggccggcgtggacatctat
tcgctgaccaagtacacccgttccaaccagaacacctgcatcaaccagcgcccgctggtg
aaggcgggcgatgtgatcgcgcgcggcgatgtgctcgcggacggcccctcgacgaatctc
ggcgagctggccctggggcagaatctgctggtggccttcatgccctggaacggctacaac
ttcgaggactcgattctgatttccgagcgtgtcgttcacgacgaccgcttcacgacgatc
catatcgaggaactcacctgcgtcgcccgcgacaccaagttggggccggaggagatcacc
gccgatatccccaacgtaggcgatgtcgcgctggcgaagctcgatgaagccggcattgcc
ttcatcggtgcggaagtgaaggccggcgatatcctggtcggcaaggtcacgcccaagggt
gaaacccagctgacgccggaggagaagctgctgcgggcgattttcggcgaaaaggcctcc
gacgtgaaagacacctccctgcgcgttccgccgggcatggacggcaccgtcatcgacgtg
cgggtgttcacccgcgacggcgtcgagaaggactcgcgcgccctgtcgatcgagaagttc
gagctggagaaggttcgcaaggatctggaggatcagcggcgcatcctggaagacgatctg
ttccagcgtgtgcgcgccgtattgctgggcaaggcggccgaggcgggtccgaagaaattc
aagccgggctcgctggtggatgaagcctacttgtcggagctgccgcgtgagcagtggctg
gaaatccggctgcgggacgaggatgacaatgcggcggtcgagcgtaccgcggagcgcctg
aagctgcagcgcaaggagttcgagaagcgttacgaggaaaagcgcgccaagatcacggcc
ggcgacgatctggctccgggcgtgctcaagatggtgaaggtatacctggccgtgaagcgc
cgcgtgcagcccggcgacaagatggccggccgtcacggcaacaagggtgtggtgtcgacc
atcattccggtcgaggacatgccctacacggaggacggcacgccggtcgacatcgtgctc
aatccgctgggtgtgccgtcccgcatgaatatcggccagattctcgagacgcaccttggc
tgggcggcaaagggcatcggcctgaagatcggccgcatgctcgatgccatgtccgatggg
ccgggacacggcgtgggcaggctccgggagttccttgacgaggtctataacaagaccggc
ggtcagaaggaaaacctggaggctctcgacgatgcggaaatcctctcgctggccgacaat
ctgcgccacggcgtgccgatggcgacgccggtgttcgacggcgcttccgagcaggaaatc
aagcatatgctggcgctcgccgacctgccttccagcggccagacgacgctgttcgacggc
cgtacgggcgagcgtttcgagcgatcggtaacggtcggttacatgtacatgctgaagctg
aaccacctggtcgatgacaagatgcatgcacgttccaccggtccgtactccctggtgacc
cagcagccgctgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaggta
tgggcgctggaggcctacggtgcctcgtacacgctgcaggaaatgttgaccgtcaagtcc
gacgacgtgaccggccgcacgcagatgtacaaggcgatcgtcgacggcaatcacgaaatg
aaggccggtatgcccgaatccttcaacgtgctggtcaaggaaatccgctcgctgggcatc
aacatggaactggagcaggagagcgagaagtga
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integrated database retrieval system
