Streptococcus dysgalactiae subsp. equisimilis ATCC 12394: SDE12394_06880
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Entry
SDE12394_06880 CDS
T02017
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sdg
Streptococcus dysgalactiae subsp. equisimilis ATCC 12394
Pathway
sdg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SDE12394_06880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdg03400
]
SDE12394_06880
DNA repair and recombination proteins [BR:
sdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SDE12394_06880
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SDE12394_06880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
MnmE_helical
Kinesin
AAA_7
AAA
AAA_22
UB2H
Microtub_bd
AAA_5
AAA_16
AAA_19
AAA_14
DUF87
Motif
Other DBs
NCBI-ProteinID:
ADX24832
LinkDB
All DBs
Position
complement(1326489..1328480)
Genome browser
AA seq
663 aa
AA seq
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MIDKRDDKPFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINK
VNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
NDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQ
LVDIQFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTI
GEVDHLILFPATHFVTNDEHMEQSIAKIQAELEEQLKVFETEGKLLEAQRLRQRTEYDIE
MLREMGYTNGVENYSRHMDGRAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQ
ARKQMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTIVEQIIRPT
GLLDPEIDVRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI
QTIGRAARNADGHVIMYADKVTESMQRAIDETARRREIQMAYNEAHGIIPQTIKKDIRDL
ISISKAAESDVAETAVDYETMSRSERKEAIKTLQKQMQEAAELLDFELAAQIRDMILELK
LMD
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgattgataaacgtgatgacaaaccttttcatttggtttcaaaatatgagccatctggc
gaccaaccccaagctattgagaccttagtagacaatattgaaggtggagaaaaagctcag
attcttttgggagctactgggacgggaaagacctataccatgagtcaggtcattaacaaa
gttaataaaccgaccttagtgattgctcacaataaaaccttagcgggacagctttatgga
gagttcaaggaatttttccctgataatgctgtggaatattttgtttcctattatgattac
taccaacctgaagcctatgtgccatcaagcgacacctatatcgaaaaagacagctctgtc
aatgatgagattgataaacttcgtcattccgcaacctcagccttattagagcgtaatgat
gttattgtagtggcttcggtctcatgtatttacggactgggttctccaaaagagtatgct
gattcagcagtgagcctcagacctggacaagaaatttctagggatcaactgcttaaccag
ctggtggatattcagtttgagcgtaacgatattgattttcaacgtggccgttttcgagtt
cgcggggatgtggttgaagtttttcccgcttcaagagatgaacatgcctttcggatagaa
ttttttggagatgagattgatcgtattcgagagatcgaaagtttgactggtaagaccata
ggagaagtagatcatttgattctgtttcctgctactcactttgttaccaatgatgaacac
atggaacaatccattgctaagattcaagctgaactagaagaacagttgaaggtttttgaa
actgaaggcaaattattggaagcgcagcgattacgccaaagaactgagtatgacattgaa
atgttaagggagatgggttacactaacggggttgaaaactattctcgccatatggatggt
cgagcagcaggagaacccccctatacgttattagacttcttcccagaagattttttgatt
atgattgatgaaagtcacatgacaatggggcagattaaaggcatgtataatggtgaccaa
gctagaaagcaaatgctagttgattatgggtttaggttgccctctgctttggataatcgt
cctttaagacgggaagagtttgaaagccatgtacaccaaatcgtgtatgtttctgctact
ccaggtgactatgaaatggagcagacagatacaattgtggaacaaatcattcgtccaacg
ggcttgcttgatcctgaaatcgatgtgcgaccaagtatggggcaaatggatgacctattg
ggagaaatcaatcagcgtgttgaacgtggtgagcggacctttatcacaacactgacgaaa
aaaatggcagaagacctgacagactatctaaaagaaatgggtgtcaaggtcaaatatatg
catagcgacataaagaccttagaacggacagaaattatccgtgacttgaggttaggtgtc
tttgatgtacttataggaatcaacttactgcgcgagggaattgatgtaccagaagttagt
cttgtcgccattttggatgcggataaggagggcttcctccgtaacgagcgtggtttgatt
cagactattggacgagcagcccggaatgcagatggacatgtgattatgtatgctgataag
gtcacggaatcgatgcaacgggctatcgatgaaacggctcgtcgtcgtgagattcaaatg
gcttataatgaagcacatgggattatcccgcaaaccatcaaaaaggatatcagagatctt
atcagtatcagcaaagcagcggagtctgatgtcgcagaaactgcagtggactatgaaacc
atgtctcgttctgagcgaaaagaagctattaaaaccttacagaagcagatgcaagaagca
gctgaattacttgattttgaattggctgctcaaattcgtgacatgatattagagttgaaa
ctaatggattag
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