Sulfurospirillum deleyianum: Sdel_1371
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Entry
Sdel_1371 CDS
T01126
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdl
Sulfurospirillum deleyianum
Pathway
sdl03030
DNA replication
sdl03410
Base excision repair
sdl03420
Nucleotide excision repair
sdl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sdel_1371
03410 Base excision repair
Sdel_1371
03420 Nucleotide excision repair
Sdel_1371
03430 Mismatch repair
Sdel_1371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdl03032
]
Sdel_1371
03400 DNA repair and recombination proteins [BR:
sdl03400
]
Sdel_1371
Enzymes [BR:
sdl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sdel_1371
DNA replication proteins [BR:
sdl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sdel_1371
DNA repair and recombination proteins [BR:
sdl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sdel_1371
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sdel_1371
MMR (mismatch excision repair)
DNA ligase
Sdel_1371
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sdel_1371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
ACZ12391
UniProt:
D1B2S1
LinkDB
All DBs
Position
complement(1384072..1386018)
Genome browser
AA seq
648 aa
AA seq
DB search
MNFQEYSEKIEILKAWAKAYYVDDAPIASDEEYDRLYHEILAFEKENPLFADESSPTKRV
GGMVLEGFNKASHKARMWSMEDVFDEHDLDAWIERVKKVKENFTFYCEPKFDGASMNLIY
DKGVLQQAITRGDGSIGEDVTQNVKTIGSIPLQIAYEGLIEIRGEVVIKKADFECLNEER
LHTNEPLFANPRNAAAGSLRQLDTSVTAKRKLMFYPWGIGENQLVQTRLSEKMRFVYDLG
FLQPPRIVVTQNVEDVHMLYHELIETRDAIEMMMDGMVVKVDEIALQEELGYTVKYPKWM
VAFKFPAIEKVTKLRAITLQVGRTGVVTPVAEVEAVNIEGVVVERATLHNFDEIERKDIR
IGDSVIIIRSGDVIPKIIKVLVERRDGTEVIPKRPLVCPVCGGELLDEGALIKCQNLSCD
ARVVGAMIHFASKKALNIDGLGDKIIEQLYAQKVVLHVKDLYTLSLEQLLALEGFKVKKA
QNLLDAIAQSKGVALEKFINALGIEHIGEVAAKKIARTFGLEWLEATHEQIIGLEGFGEE
MAKSLVEFIHVNAVETKELMGIIAPVASKLEITESVFTGKTVVLTGSMSKSRDEMKAMLE
SLGAKVSGSVSKKTDFVIFGEEAGSKLDKALELGVKTLSEAEVNEMLI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaattttcaagaatacagtgaaaaaatagagattttaaaagcgtgggcaaaagcctat
tacgtcgatgatgcgcccattgccagtgatgaagagtatgacaggctctaccatgagatt
ttggcatttgagaaggaaaatcctctctttgcggatgagagtagccctacaaagcgtgtg
ggtggtatggtgcttgaaggttttaataaagcctcgcataaagcccgtatgtggagcatg
gaagatgtttttgatgaacacgatttggatgcgtggatagagcgtgttaaaaaagttaaa
gaaaattttaccttttattgcgaacctaagtttgatggggcgagtatgaaccttatttat
gacaaaggtgtgcttcaacaagcgattaccagaggcgatggaagcatcggcgaggatgtc
acgcaaaatgttaaaacgataggttctattccgttgcagattgcctatgaagggttgatt
gagattcgaggcgaagtggtgattaaaaaggcggattttgagtgcttaaatgaggagcgt
ttgcacacaaatgagccactttttgcgaatcctagaaatgcagccgcagggagtttgaga
cagttagatacgagtgtaacagctaaacgtaaattgatgttttatccatggggcattggg
gaaaatcagttagtgcagacacgtttaagtgagaaaatgcgctttgtgtatgatttgggt
tttttacaaccaccacgcattgttgtcacacaaaacgtggaagacgttcatatgctttat
cacgaattgattgaaacacgtgatgccattgagatgatgatggatggcatggtggtaaaa
gtcgatgaaattgccttacaagaggagttaggctataccgtgaagtatcctaaatggatg
gtggcgtttaaatttccagccattgagaaggtaacaaagcttagagccattaccctgcaa
gtgggacgtacgggggtggtcacacctgtggcggaagtcgaagcggtgaatattgaaggg
gttgtggtggagcgcgccacacttcacaattttgatgaaattgagcgtaaagatattcgc
ataggggatagtgttattattattcgtagtggtgatgtgattccaaagattattaaagtg
ttggtggagcgcagggacggcacagaagtcattcccaaacgtcctttggtctgtcctgta
tgcgggggagaacttttggatgagggagcgcttattaagtgtcaaaacctctcctgtgat
gcgagggttgttggagcgatgattcactttgcttcgaaaaaagcgctcaatattgacggt
cttggtgataagattattgagcaactctatgcgcaaaaagtggttttacatgtaaaagat
ttgtacacactctctttagagcagctcttagcattagagggatttaaagttaaaaaagca
caaaaccttttggatgcgattgctcagagtaaaggggtggctttagagaagtttattaat
gctttgggcattgagcacattggtgaagtagcggctaaaaagattgcgagaacctttggc
ttagagtggttagaggcaacgcacgagcagattattggcttagagggatttggtgaagag
atggcaaaaagtttggtggagtttattcacgtcaatgccgttgagaccaaagagcttatg
gggattattgcgcctgtggcatcaaaacttgaaattacagagtcggtttttacaggcaaa
acggttgtcttaacaggctctatgtccaaatctcgtgatgagatgaaagcgatgcttgaa
tctttaggagcgaaagtgagtggcagtgtctctaagaaaacggattttgtgatttttggg
gaagaggcaggtagtaaattggacaaagcacttgaattgggtgtcaaaacgctgagtgaa
gcggaagtaaatgagatgttaatatga
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