KEGG   Sulfurospirillum deleyianum: Sdel_1371
Entry
Sdel_1371         CDS       T01126                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sdl  Sulfurospirillum deleyianum
Pathway
sdl03030  DNA replication
sdl03410  Base excision repair
sdl03420  Nucleotide excision repair
sdl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sdl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Sdel_1371
   03410 Base excision repair
    Sdel_1371
   03420 Nucleotide excision repair
    Sdel_1371
   03430 Mismatch repair
    Sdel_1371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdl03032]
    Sdel_1371
   03400 DNA repair and recombination proteins [BR:sdl03400]
    Sdel_1371
Enzymes [BR:sdl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Sdel_1371
DNA replication proteins [BR:sdl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Sdel_1371
DNA repair and recombination proteins [BR:sdl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Sdel_1371
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Sdel_1371
   MMR (mismatch excision repair)
    DNA ligase
     Sdel_1371
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Sdel_1371
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 HHH_5 PTCB-BRCT BRCT_2 DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: ACZ12391
UniProt: D1B2S1
LinkDB
Position
complement(1384072..1386018)
AA seq 648 aa
MNFQEYSEKIEILKAWAKAYYVDDAPIASDEEYDRLYHEILAFEKENPLFADESSPTKRV
GGMVLEGFNKASHKARMWSMEDVFDEHDLDAWIERVKKVKENFTFYCEPKFDGASMNLIY
DKGVLQQAITRGDGSIGEDVTQNVKTIGSIPLQIAYEGLIEIRGEVVIKKADFECLNEER
LHTNEPLFANPRNAAAGSLRQLDTSVTAKRKLMFYPWGIGENQLVQTRLSEKMRFVYDLG
FLQPPRIVVTQNVEDVHMLYHELIETRDAIEMMMDGMVVKVDEIALQEELGYTVKYPKWM
VAFKFPAIEKVTKLRAITLQVGRTGVVTPVAEVEAVNIEGVVVERATLHNFDEIERKDIR
IGDSVIIIRSGDVIPKIIKVLVERRDGTEVIPKRPLVCPVCGGELLDEGALIKCQNLSCD
ARVVGAMIHFASKKALNIDGLGDKIIEQLYAQKVVLHVKDLYTLSLEQLLALEGFKVKKA
QNLLDAIAQSKGVALEKFINALGIEHIGEVAAKKIARTFGLEWLEATHEQIIGLEGFGEE
MAKSLVEFIHVNAVETKELMGIIAPVASKLEITESVFTGKTVVLTGSMSKSRDEMKAMLE
SLGAKVSGSVSKKTDFVIFGEEAGSKLDKALELGVKTLSEAEVNEMLI
NT seq 1947 nt   +upstreamnt  +downstreamnt
atgaattttcaagaatacagtgaaaaaatagagattttaaaagcgtgggcaaaagcctat
tacgtcgatgatgcgcccattgccagtgatgaagagtatgacaggctctaccatgagatt
ttggcatttgagaaggaaaatcctctctttgcggatgagagtagccctacaaagcgtgtg
ggtggtatggtgcttgaaggttttaataaagcctcgcataaagcccgtatgtggagcatg
gaagatgtttttgatgaacacgatttggatgcgtggatagagcgtgttaaaaaagttaaa
gaaaattttaccttttattgcgaacctaagtttgatggggcgagtatgaaccttatttat
gacaaaggtgtgcttcaacaagcgattaccagaggcgatggaagcatcggcgaggatgtc
acgcaaaatgttaaaacgataggttctattccgttgcagattgcctatgaagggttgatt
gagattcgaggcgaagtggtgattaaaaaggcggattttgagtgcttaaatgaggagcgt
ttgcacacaaatgagccactttttgcgaatcctagaaatgcagccgcagggagtttgaga
cagttagatacgagtgtaacagctaaacgtaaattgatgttttatccatggggcattggg
gaaaatcagttagtgcagacacgtttaagtgagaaaatgcgctttgtgtatgatttgggt
tttttacaaccaccacgcattgttgtcacacaaaacgtggaagacgttcatatgctttat
cacgaattgattgaaacacgtgatgccattgagatgatgatggatggcatggtggtaaaa
gtcgatgaaattgccttacaagaggagttaggctataccgtgaagtatcctaaatggatg
gtggcgtttaaatttccagccattgagaaggtaacaaagcttagagccattaccctgcaa
gtgggacgtacgggggtggtcacacctgtggcggaagtcgaagcggtgaatattgaaggg
gttgtggtggagcgcgccacacttcacaattttgatgaaattgagcgtaaagatattcgc
ataggggatagtgttattattattcgtagtggtgatgtgattccaaagattattaaagtg
ttggtggagcgcagggacggcacagaagtcattcccaaacgtcctttggtctgtcctgta
tgcgggggagaacttttggatgagggagcgcttattaagtgtcaaaacctctcctgtgat
gcgagggttgttggagcgatgattcactttgcttcgaaaaaagcgctcaatattgacggt
cttggtgataagattattgagcaactctatgcgcaaaaagtggttttacatgtaaaagat
ttgtacacactctctttagagcagctcttagcattagagggatttaaagttaaaaaagca
caaaaccttttggatgcgattgctcagagtaaaggggtggctttagagaagtttattaat
gctttgggcattgagcacattggtgaagtagcggctaaaaagattgcgagaacctttggc
ttagagtggttagaggcaacgcacgagcagattattggcttagagggatttggtgaagag
atggcaaaaagtttggtggagtttattcacgtcaatgccgttgagaccaaagagcttatg
gggattattgcgcctgtggcatcaaaacttgaaattacagagtcggtttttacaggcaaa
acggttgtcttaacaggctctatgtccaaatctcgtgatgagatgaaagcgatgcttgaa
tctttaggagcgaaagtgagtggcagtgtctctaagaaaacggattttgtgatttttggg
gaagaggcaggtagtaaattggacaaagcacttgaattgggtgtcaaaacgctgagtgaa
gcggaagtaaatgagatgttaatatga

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