Stegodyphus dumicola: 118191277
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Entry
118191277 CDS
T07385
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118191277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdm03019
]
118191277
Messenger RNA biogenesis [BR:
sdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118191277
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118191277
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
118191277
NCBI-ProteinID:
XP_035217967
LinkDB
All DBs
Position
Unknown
AA seq
1983 aa
AA seq
DB search
MNLDSLSFALSNISYSVANLTKKNFKSSVQEISRLVAHHGLEAERHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECAYILNKPNFVSTFCYALDCPLQQQKSLRPSANLLPQLSRVLK
LSSVQEVAFGLALLNSSIPDHTNYAVGFLKQKLPDFIKHICELDIENQEEPLDLPPVILH
LLLNHLFCGTKDLGISSDLKESFVKSLNQYLGDNIPLFLRPFLRSSDLDPVMDSVGNSTK
SSEDSIIDVIQEMGYNFTSSMEECRNNMIQIGLREITAAVVARILSMMARSHSGLTDAMP
IQNLNSNSIIMWNDKEKSEGNQQPTWNVEILVQVIRDMAPSLDWKEVVHELDNPGFHLKD
RKGFKLLWQALNMGLGHETFPMDRMYRRWRNAEGQFSFFQQVLNSSDIVCLADYTHRPVL
TDALKAPPEDDNRSISNWKSLDLIETLLYLSETPYFKDELFKFPISHCPDLLMLGLIQTS
RTINHIHKELLSTLIPIFLGNHPNSAMVFHLAWHSQFHSTAIRNIIMHAMAEWYVRGEGD
QTRLSRILDVAQDLKALSMLLNLTPFMFVIDLACLASRREYLKLDKWLSDKVREHGEAFI
QACVTFLNRRCPQIMGGNIKEENLPKSALPPETLATILTLLHNLVGSISQELSETILTMV
GNCGVVLNKNRLPPPGVVKTSQGLQSVLSSAVINTPNASLDQLTNLTSSVSGLTLGVKTI
SSVNSGFSLPCTLSSFSIASSGSPAKMLSVATPSTQTVSTVSQITQNPFSSSLPTGSSQL
PGQFGSQLVGDIGAIFPDASHPVSKEIEDEANSYFQRIYNHAPHSSLAIEDVLEMLKRFQ
DSPIKREREVFSCMIRNLFEEYRFFPQYPDKELITTAQLFGGIIDQNLVRPRTDAQKKSL
ETGQLIDSYITLGLALRYVLESLKKPQGSKMYYFGITAMDRFKTRLKEYPQYCQHLTSIA
NFHELPPHLIEYIEYGARSQEPPNRLQGPIIQSVASAFPSLTQTPSLPLTSATTVTVTVT
TVSTKTTVTGKPSIANATNIDTLLVATEKDEKLVVPPESVQDKVAFIVNNLSQANLVQKT
DEFREIVKEEYWPWASQYLVMKRASIEPNFHSLYSNFLDTLKLCDLTKLVIRETFRNIKV
LLRSDKGIANFSDRSLLKNLGHWLGMLTLAKCKPILQIDIDVKSLLIEAYHNGQQELLYV
VPFVAKVLESCAKSKVFKPPNPWTMGIMNVLGELHQEQDLKLNLKFEIEVLCKTLSIDIN
DLKPGNILKDQERLLKIEPQLSPLPKHKEQQVISSVNMQVPAQPALGNVVPSTPNPMPNN
VLHEETIQNVPISSSPPIVSLTSTQLPPISTSMPQPQFSYSDINVLSVGQLNQHLLINSQ
LPLFQAHAALKQCVRLAVERAVQEWMAPVVDRSIKISLTSCEQIIKKDFALDPEESRMRI
SAHHMIRSLTAGMVMITCRDPLFMSIHTNLRNNFLSTLRNATPQQKELIDQAADIVARDN
LELACCFIQKTAVEKALPEIDKRLSSEYEIRKHARSEGRRYCDPQALTYQAERMPEQIRL
KVGGVTPQQMAVYEEFARMIPGFLPNGGREQQSSFVNKPMTLMQPYMNDDITQLYDKIIS
DLELLLHGIIVVPGNPHVTALHNLLEAVLHTRPSREMQSAVGLLQKTVESFLEGMSQPAS
DSEIMVRFKEGHLIVMKSLGDNRVYGNQWTSKQVTRWLIESREECRYNVEAVDLLIRNHL
INLQAYDLHLTQSMENGMNIMAVQFAMQLVKLYLLDERQNAIVTEVDLYNTVETLARIAS
LPRQHPDGLVQLLEMLRNTGEPAFLDRTTGGGPMSMMYSGITQAREFDDPPGLSEKTEFL
LREWVNMYHAPNAGRDSTKAFSLFVHQMNLQGILKTDELITRFFRLSTEMCVDLCYHALN
DQNTKSPTVVRAKCFHTLDAYVRLIALLVKHSGDANNTITKVNLLNKVCMNLHLYSININ
SVF
NT seq
5952 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagactcgttgtcttttgctttgtctaatattagttattccgtggctaattta
actaaaaagaactttaaatctagtgtacaggaaatatctagacttgtagcccatcacggc
ttagaggcagagaggcaccttttgcgttgtctattttctcatgtagatttcagtggtgat
ggtaaaagtagtggtaaagattttcatcagacgcagtttttgattcaggagtgtgcatat
attttaaacaaaccaaattttgtatcgacattttgctacgctttagactgccctctccag
cagcaaaagagtctcagaccttctgcgaaccttttacctcaattaagcagagtactcaag
ctatcttcagttcaggaagttgcttttgggttagctcttttaaattcatccattcctgat
catacaaattacgccgtaggttttctaaagcaaaaactgccagattttataaagcacatt
tgtgaattagatatagaaaatcaagaagaaccacttgatctacctcctgtgatcttgcat
ttgttgctcaaccatctgttctgtggaacaaaagacttaggaatttcttcagatcttaag
gaatcatttgtaaaatcattaaatcaatatttgggggataatatacctcttttcttaaga
cctttcctgcgttcaagtgacttagatccagtgatggattctgttggaaattctacaaaa
tcttctgaagactctatcatagatgtaattcaagaaatgggatataatttcacatcaagt
atggaagaatgccgaaacaatatgatacaaattgggctcagagaaattactgctgcagtt
gttgcacgaatactttccatgatggcgaggtcacattctggtttaacagatgccatgcca
attcagaacttaaacagcaatagtataattatgtggaatgataaagagaagtctgaaggg
aatcagcaacctacttggaatgtggaaattttggtccaggttattcgtgatatggcacca
tcacttgattggaaagaagttgtacatgaacttgataatcctggattccatttgaaggat
cgaaagggtttcaagctcctttggcaagcattaaatatgggtcttggccacgagactttt
cctatggataggatgtatagacgatggcgaaatgctgaaggacaattttcctttttccaa
caagttttaaatagttccgatatagtgtgtttagccgactatactcaccgtcctgtttta
acagatgccttaaaagctcctccagaagatgacaaccgaagtatctcaaattggaaatca
ctcgatttaattgagactttgttatacttatcggagacaccctattttaaagatgagctt
tttaaattccccatctcacattgtcctgatcttttaatgttgggactgattcagacatct
cgaacgatcaatcatatccataaagagctgttatcaacacttattccaatttttcttggc
aatcatcctaattcagctatggtttttcatcttgcatggcatagtcagtttcactcaaca
gccatacgaaatataattatgcatgcgatggccgaatggtatgtacgaggcgaaggagac
caaacgcgactttctaggattctggatgttgcacaggacttaaaggccttgtctatgtta
ttgaatttgactccttttatgtttgtaatagatctggcatgcttagcatcacgaagagag
tacctcaagttagacaagtggctcagtgataaagttagagaacacggtgaagcttttatt
caagcatgtgtcactttcttgaatcggcgctgtcctcaaattatgggtggtaatataaaa
gaagaaaacctgccaaaaagtgcattgccacctgaaactttagcaacaatattgacatta
ttacataatcttgtggggtcaatttcccaagaactttcagaaacgatattgacaatggtt
gggaattgtggtgtagttcttaataaaaatcgtcttcctccacctggtgttgttaaaact
tctcaaggactgcaatcagtgttgtcatctgctgtcatcaataccccaaatgcaagtttg
gaccagctgaccaatttaacttcatctgtgtctggtctcactttgggtgttaagactata
agcagtgtaaattctggattttctctaccatgtacattaagctctttttctattgcatcg
tctggatcacctgcgaaaatgttatctgtggctacgccttcaacacagactgtgtctact
gtcagtcaaattacacaaaatccgttctcatctagcttacctacaggatcatcacaactt
cccgggcagtttggctcccagctggttggagatattggagccatttttccagatgctagt
catcctgtatctaaggagatcgaagatgaagcgaatagctactttcagaggatatataat
catgcaccccattcatcacttgctattgaagatgttcttgaaatgttaaagcgatttcag
gattcacctattaaaagagaaagggaagtatttagctgcatgataagaaacttatttgaa
gaatacagattttttccccaatatcctgataaagagctgataacaactgctcaactattt
ggtggaattattgatcaaaacttggttagaccaagaacagacgcgcaaaagaagagtcta
gaaacggggcaactgatagacagctacataactttaggtctggcattaagatatgtcttg
gaatctctgaaaaagccacaaggaagtaaaatgtactactttggtataacagcaatggat
cgttttaaaacaaggctgaaagaatatcctcaatattgtcaacatcttacatccatagca
aattttcatgaacttccacctcatcttattgagtatatagaatatggtgctagatctcag
gagcctccaaatcgtcttcaaggcccaattatacaaagtgttgcttcagcttttccttcc
ttaacccagactccaagtttaccactcacatctgcaaccactgtaacagttacagttaca
actgtttcaactaagactacagtgacaggaaagccttccatcgcaaatgctacaaacata
gatacacttttggtggctacagaaaaggatgaaaaacttgttgtacctccagagtctgtg
caagataaagtagcattcattgtaaataatttatctcaggcaaacttggtccaaaagact
gatgaatttagagaaattgtaaaagaagaatattggccttgggcttcacaatacctagtc
atgaagagagcttcaatagaaccgaacttccactctttatattcaaattttttagataca
ctaaagttgtgtgatcttacaaaattggtaataagagaaacttttcgcaacattaaggtg
ttactccgaagtgataagggaattgcaaatttttctgaccgatctctgcttaagaattta
gggcattggttgggaatgctgacacttgctaaatgcaagccaattttgcaaatagatatt
gatgtcaagtcgcttttgattgaagcataccataatggccagcaagaactgttatatgtc
gttccatttgttgctaaagttttagaatcttgtgcaaaaagtaaagtattcaaacctccc
aatccttggactatgggaataatgaatgtattaggtgaattacatcaagagcaagatttg
aaattgaatctgaaatttgaaatagaagttctgtgtaaaaccttaagtattgacataaat
gatctgaaaccagggaatattcttaaagaccaggagcgtttgcttaaaattgagccacaa
ctttcacctttacctaagcataaagaacagcaagtaataagctctgtaaacatgcaagta
ccggctcagcctgcattaggaaatgtagtaccctctactcctaatcctatgccaaataat
gtattgcatgaagaaactattcagaatgttccaatcagcagtagccctcctattgtttct
ctgacttcaactcaactgccaccaatttcgacttcaatgccacaacctcaattttcctat
agtgacattaatgttttgtctgttggtcaattaaatcagcatctgcttatcaactcacaa
ttgcctttatttcaagcccatgcagcattaaagcaatgtgttagacttgctgtagaaaga
gctgttcaggaatggatggctccagttgttgatagatccattaaaatttctttaacaagc
tgtgaacaaataattaaaaaggattttgctctagaccctgaagaatcacgaatgagaatt
tctgctcatcatatgattcgtagtttaacagcaggaatggttatgatcacttgtcgtgac
cctctgtttatgtctatacatacaaatttgagaaataatttcttgtctactttaagaaat
gccacaccccaacaaaaggaattgattgaccaagcagctgatattgtagcacgggataat
ttggagcttgcatgctgctttattcaaaagactgcagtggagaaagcccttccagaaatt
gacaagcgtttaagttcagaatatgaaatcagaaagcatgcaagaagtgaaggtcgaaga
tactgtgatcctcaagcattaacttaccaagctgagagaatgcctgagcagatacgctta
aaggtgggtggtgtgacacctcaacagatggcagtgtacgaagaatttgctcgaatgatt
ccaggattcttaccaaatggaggaagggagcagcagagtagcttcgtgaataaacccatg
actcttatgcagccatacatgaatgatgacattacacaattgtatgataaaatcatttcg
gatttagaactgctgctgcacggtattattgttgtacctggcaatcctcatgtaactgca
cttcacaatttactagaggctgttcttcatactcgtccttcaagggagatgcaatctgct
gttggtttattgcaaaagactgttgaaagtttcttagaaggcatgtctcaacccgccagt
gatagcgaaataatggttcgcttcaaagaaggtcatcttattgttatgaaatctttggga
gataatcgagtatatggtaatcagtggacgagtaagcaagtcactcggtggttgattgaa
agtagagaagaatgccgctacaatgttgaggctgtagatcttttaatcagaaatcatttg
attaacctgcaagcatatgatctgcatctaactcagtcaatggagaatggaatgaacatc
atggctgtccaatttgcaatgcagttagttaagttgtatcttttggatgaacggcagaat
gctattgtaactgaagttgatctctataatacggtggaaactttagctcgtatagcatca
ttaccacggcaacatccagatggcttagtacaacttttagagatgcttcgaaatactggg
gaacctgcttttttagatcgtacaactgggggaggtccaatgtctatgatgtattctgga
ataacacaagcaagagaattcgatgatccaccaggtctttccgaaaaaactgagttcctg
ttgcgagaatgggtgaacatgtaccacgctcctaatgctggaagggatagtactaaagca
ttttcgctctttgttcatcagatgaatttacagggtattttaaagacagatgaactgata
acacgattttttcgactgagcacagaaatgtgtgtggatctatgttatcatgcactgaat
gaccagaataccaaatcaccaacagttgtcagagccaaatgtttccacacactggatgct
tacgtgcgcttgattgccctcttagtgaagcatagcggtgatgccaacaacactataacc
aaagtcaatcttttaaataaggtatgtatgaatttacatctatacagcattaatataaat
tctgtgttttga
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