Sphingomonas donggukensis: M9980_11530
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Entry
M9980_11530 CDS
T08944
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sdon
Sphingomonas donggukensis
Pathway
sdon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9980_11530 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdon03019
]
M9980_11530 (recQ)
03400 DNA repair and recombination proteins [BR:
sdon03400
]
M9980_11530 (recQ)
Enzymes [BR:
sdon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M9980_11530 (recQ)
Messenger RNA biogenesis [BR:
sdon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M9980_11530 (recQ)
DNA repair and recombination proteins [BR:
sdon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M9980_11530 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
RecQ_Zn_bind
Helicase_C
ResIII
DUF8109
Motif
Other DBs
NCBI-ProteinID:
URW75172
UniProt:
A0ABY4TSB9
LinkDB
All DBs
Position
complement(2346563..2348335)
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AA seq
590 aa
AA seq
DB search
MSDPRDTLQSVFGFPDFRGVQRQVVDRVLAGQSTLAVMPTGAGKSLTYQLPAVMQTGTCV
VVSPLIALMHDQLRAATAVGIRAATLTSVDENRAETRGRFLDGALDLLYVAPERASTGDF
RELLDRGNVCLFAIDEAHCVSEWGHDFRPDYRLLRPLLDRFPEVPRLALTATADRHTRAD
ILDQLGIPQDGLIVAGFDRPNIQYRIAPKDNATRQIADLIAEQPGPGIVYVPSRAGTEKM
AAALAKTGRPTRAYHAGLDPAMRAANQAAFVASEDMVICATVAFGMGIDKPDVRFVAHAG
LPKSIEAYYQETGRAGRDGDPAVAHLFWGAEDFAKARQRVGEVEPARQAGERTRLAALGG
LVETTGCRRKLLLAHFGDDAPENCGNCDNCLNPPVGTDATEVARKFLSAVFRTGQSFGVG
YIEAILTGQSSERSLMNGHEALSVFGIVGGEEAALIKPVARALQTRDALRANPHGGLEFG
PGARALLKGEATLSLVVPPKRERRRRGGAASGAAANPVGNPLFEALRATRRELAQEGGVP
PYVIFHDSVLRDMATIRPATLSALGTITGVGARKLDAYGDAFLAVIRQFA
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgatccccgcgataccctccagtccgttttcggctttcccgacttccgcggcgtc
cagcggcaggtggtcgaccgcgtgctcgccggccagtcgacgctggcggtgatgccgacc
ggagcgggcaagtcgctgacctaccagctgcccgcggtgatgcagacggggacgtgcgtc
gtcgtctccccgctgatcgcgctgatgcacgaccagttgcgcgcggcgaccgcggtcggc
atccgtgcggcgacgctgacgagcgtggacgagaaccgcgcggaaacgcgcgggaggttc
ctcgatggcgcgctcgacctgctctatgtcgcgcccgaacgcgcctcgacgggtgatttc
cgcgagttgctcgatcgtgggaatgtctgcttgttcgcgatcgacgaggcgcactgcgtg
tcggaatgggggcatgacttccgccccgactatcgcctgctgcgcccgctgctcgaccgg
tttccggaggtgccgcgcttggcgctcaccgcgaccgccgaccgccacacccgcgctgac
atcctcgaccagctcggcatcccgcaggacgggctgatcgtcgccgggttcgaccggccc
aatatccagtaccgcatcgcgcccaaggacaatgcgacccgccagatcgccgacttgatc
gccgagcagccggggccgggcatcgtctacgtcccctcgcgtgcggggaccgagaagatg
gcggcggcgttggcgaagaccgggcggccgacgcgcgcctatcatgccgggctcgacccc
gcgatgcgcgccgccaaccaggcggcgttcgtggcgagcgaggacatggtgatctgtgcc
acggtcgcgttcgggatggggatcgacaagcccgacgtgcgcttcgtggcgcatgccggc
ctgccgaagtcgatcgaggcctattatcaggaaacagggcgcgccggccgcgacggtgat
cccgcggtcgcgcatctgttctggggcgccgaggacttcgccaaggcgcggcagcgggtg
ggcgaggtcgagccggcgcgtcaggcgggcgagcgtacgcggctggcggcgctgggcggg
ctggtcgagacgaccggatgccgccgcaagctgctgctcgcgcatttcggcgacgacgcg
cccgagaattgcgggaattgcgacaattgcctgaacccgccggtcggcaccgatgcgacc
gaagtggcgcgcaagttcctgtcggcggtgttccgcaccgggcagagcttcggcgtcggc
tatatcgaagcgatcctgaccggccagtcgagcgaacgcagcctgatgaacgggcatgag
gcactgtcggtgttcggaatcgtgggtggcgaggaggcggcgctcatcaagccggtcgcg
cgtgcgctccagacccgcgatgcgctgcgtgccaatccgcacggggggctggagttcggg
cccggtgcgcgcgcgctgttgaagggggaggcgacgctgtcgctggtagtgccacccaag
cgcgagcggcggcggcgcgggggtgcagcgagtggcgcggcggccaatccggtcggcaac
ccgctgttcgaggcgctgcgagcgacccggcgcgagctggcgcaggaaggcggggtgccg
ccctatgtcattttccacgactctgtgctgcgcgacatggcgacgatccgccccgcgaca
ctttctgcgctgggcacgatcacgggcgttggcgcgcgcaagctggacgcttatggtgac
gcgttcctggccgtgatccgccaattcgcttga
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