Staphylococcus delphini: NCTC12225_01420
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Entry
NCTC12225_01420 CDS
T06587
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
sdp
Staphylococcus delphini
Pathway
sdp03030
DNA replication
sdp03430
Mismatch repair
sdp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12225_01420 (holA)
03430 Mismatch repair
NCTC12225_01420 (holA)
03440 Homologous recombination
NCTC12225_01420 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdp03032
]
NCTC12225_01420 (holA)
03400 DNA repair and recombination proteins [BR:
sdp03400
]
NCTC12225_01420 (holA)
Enzymes [BR:
sdp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12225_01420 (holA)
DNA replication proteins [BR:
sdp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC12225_01420 (holA)
DNA repair and recombination proteins [BR:
sdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC12225_01420 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
LCIB_C_CA
NAD1
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
VED62794
LinkDB
All DBs
Position
1:1426384..1427358
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AA seq
324 aa
AA seq
DB search
MSNIHVIHGEVPELIDRETEQLTKKYLGNEPKDDFNFVKYNLYETTLNTIIEEAMTLPFF
SDKKIVVVQNSYVFTGEKPPKEAHANADSLLEFIEKYDGASLIIFQVQAAKLDERKKVVK
ALKKVANIKKIEQMTEQEMQKWIHQYLNQSFKEIKQDALEALIQLTGIHYRMIKQELDKL
LLFVGDRPTINKEDVQTIVNRSLEQNVFLLTDYIQKGQKSQAISLVKDLIQLKEEPIKLL
ALITSNYRLYYQSKILNQKGYSGQQIAKTVGVHPYRVKLALNQARKYDLETLLTIMDVCA
ETDYQLKSSYMDKVLILELFIMKL
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatattcatgtcattcacggtgaagtcccagaattaatagatcgtgaaacagaa
caacttactaaaaagtatttgggcaatgaacctaaagatgactttaattttgttaaatac
aatttgtatgaaacgaccttaaatacgattattgaagaagcgatgacacttccatttttt
tcagataaaaagattgtcgttgtacaaaatagctatgtatttactggtgaaaaaccacct
aaagaggcacatgcaaacgcagacagcttattagagtttattgaaaagtatgatggggct
tctttaattatttttcaagttcaagcagcgaagttagacgaaagaaaaaaagttgttaaa
gcattgaaaaaagtggcgaacatcaagaaaattgaacaaatgactgaacaagaaatgcaa
aaatggattcatcaatatttgaatcagtccttcaaagagatcaaacaagatgcattagaa
gcgttgatccaattgacaggcattcattatcgtatgattaagcaagaattagataagtta
ttgctatttgtcggtgatcgcccaaccattaataaagaagatgtccagacgattgtgaat
agaagtttggagcaaaacgtttttttattgacggattatattcaaaaaggacaaaagtca
caagccatttcgctcgttaaagatttaattcaattaaaagaagagccgattaaactgttg
gcgttaattacaagtaactatcgtttgtattaccaaagtaaaattctcaatcaaaaagga
tactcaggtcagcagatcgcaaaaacggtaggtgtccatccttatcgcgtaaaactcgca
ttgaatcaagcacgaaaatacgatttagagacgttgttaaccattatggatgtttgtgca
gaaacagactatcaattgaaatcatcttatatggataaggtgctgattttagaattgttt
attatgaagttgtaa
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