Sulfuricella denitrificans: SCD_n01547
Help
Entry
SCD_n01547 CDS
T02857
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sdr
Sulfuricella denitrificans
Pathway
sdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCD_n01547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdr03019
]
SCD_n01547
03009 Ribosome biogenesis [BR:
sdr03009
]
SCD_n01547
Enzymes [BR:
sdr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SCD_n01547
Messenger RNA biogenesis [BR:
sdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCD_n01547
Ribosome biogenesis [BR:
sdr03009
]
Prokaryotic type
rRNA processing factors
SCD_n01547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAN35369
UniProt:
S6AL54
LinkDB
All DBs
Position
1558109..1560685
Genome browser
AA seq
858 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIESAGKEQRKSNIYKGVITRIEPSLEAAFVDY
GTERHGFLPFKEVSRVNFLLPEGTDISRARIQDVLKEGQELIVQVEKDERGNKGAALTTF
ISLAGRYLVLMPNNPRGGGVSRRIEGEERNELRDIMAQLDVPTGMSIIARTAGIGRTQEE
LQWDLNYLMQLWRAIESASQQQSGAFLIYQEGSLVIRAIRDLFQPDIGEILIDTEAIYDQ
AVQFMSHVMPGNVNKVKLYRDDVPLFSRFQIEHQIETAFAREVPLPSGGAIVIDHTEALV
SVDVNSARATRGADIEQTAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMESTRNQREVE
NRLRDGLHYDRARVQMGKISRFGLLELSRQRLQPSLGETSHIGCPRCNGTGHIRGTESSA
LHILRILQEEAMKDSTTSVHAQVPVDVATFLLNEKRAEIHEIESRFKTSIMLIPNIHMET
PNYSIVRLRSDEVSSEETPSYRMVEMPAETAAEKSLSAEDKPQRQIAAVRGITTGQPAPI
AAAEKTKQTWFGKVKIWLQGLGSTQPEEEIKPKARPARTDRPRREPRGEGREGKRDAERG
EPRRTERGEGRGGQKPRAPAQPQVKREKEAVAPQASAPVADVKTGETEAQEPRSRRGRRG
GRRERGERTERPEAPRNLPESTEVSSETVPAVIALEVASTRVEKVEAAPEMISEASLPIV
VQESTAVLVVPEPSRPVETEPVVTASADIAPVVATAEVVPTATPVDIAVAAVPVDIVPEV
APTESKPRAPRRRAPQTVQDDQIASSGLVMVETSPDKIKAVVEEAVADKPERVRPRRAPR
PKIVEESAPLVQVETQSK
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgcaacgcaagccgaagagttacgcgttgctattgtggac
ggtcaaaagctcgttgacctggacattgaatccgcaggaaaagagcaacgtaaaagcaac
atctacaaaggtgtcattacccgcatcgagcccagtctcgaggccgccttcgttgattac
ggaaccgaacgtcatggcttcctgcctttcaaggaagtttcccgtgttaatttcctgctg
ccggaaggcacggacatttcccgcgcccgcatccaggatgtactgaaagaaggccaggag
ctcatcgttcaggtggagaaggacgaacgcggcaacaaaggcgctgcgctcaccaccttc
attagcctcgctggccgttacctggtcctgatgccaaacaacccacgcgggggtggtgta
tcccgccgtatcgaaggtgaagagcgcaacgagttgcgcgacatcatggcgcagctggat
gtccccaccggcatgagcatcatcgcgcgcaccgcaggtatcggacgcacgcaggaagaa
ctgcagtgggacctgaactatctgatgcagctatggcgtgcaattgaaagcgcctcccaa
cagcaaagcggcgcctttcttatctaccaggaaggtagtctggtcatacgcgccatccgc
gacctgttccagcccgacatcggcgaaattctgatcgacactgaagcgatctatgatcag
gctgtgcagttcatgagccacgtcatgcccggcaatgtaaacaaggtcaaactgtaccgg
gatgacgtacccctgttctcgcgtttccagatcgaacaccagatcgaaaccgcgtttgca
cgggaagtccccctgccctcaggtggcgccatcgttatcgaccataccgaagcgctggtg
tcagtagacgtcaactcggcccgcgccacccgtggtgctgacattgagcagactgcgttc
aacaccaaccttgaagccgctgaagaagtggcacgccaattgcgcttgcgcgacttgggc
ggcttggtagtgatcgatttcatcgacatggaaagcactcgcaaccagcgtgaagttgaa
aatcgcttgcgtgacggcctgcattacgatcgggctcgtgtccagatgggcaagatatcc
cgctttggcctgctcgaactgtctcgccagcggctacagccctcgctcggcgaaaccagc
cacatcggttgcccacgctgcaacggcactgggcacattcgtggcactgagtcttccgct
ttgcatatcctgaggatactgcaggaagaagccatgaaggacagcacgacttcagttcat
gcccaggttccagtggacgtggcgaccttcctgctgaatgaaaaacgtgcagaaattcac
gaaatcgaatcgcgattcaagaccagcatcatgctgatcccgaacatccacatggaaacg
ccgaattattccatagtcaggctgcgaagcgatgaagttagtagcgaggaaacgccaagc
taccgcatggttgaaatgccggctgaaaccgccgcagaaaaatccttgtctgcggaagac
aagccgcaacgccagatcgctgcggtgcgtggtatcacaactggacagccagcaccgatt
gcggccgcggaaaaaaccaagcaaacctggtttggcaaggtcaagatatggctgcaaggc
ttaggcagcactcagccggaagaagagatcaagcccaaagcgcgtccagcaagaaccgac
aggccgcgccgtgaaccgcgtggtgaaggtcgcgaaggaaagcgtgatgcggagcgaggt
gaaccccgccggacagaacgcggagaaggtcgtggcggtcaaaagccacgtgcgcctgct
cagccgcaagtaaagagggaaaaagaggctgtcgcccctcaggcatctgccccggtagca
gatgttaaaacaggcgaaaccgaagcgcaggagcccaggagtcggcgaggtcgccgcggt
gggcggcgtgagcgcggggaacgcacggagcgtcctgaagcgccacgtaatcttcctgaa
agcaccgaagtttcaagcgagacagtaccggcagttatcgctctagaggtggcgagcacg
agagtcgaaaaagtagaagctgctcctgagatgatctccgaagcttcgctgcccatagtc
gttcaggagtctactgcagttttagtggtgcccgagccatccagaccagttgaaacagaa
cctgtcgtaactgcgtcagccgatatcgctccagtcgttgccacagctgaagtcgtacct
accgccaccccggtcgacatcgcagttgccgccgttccggtcgacattgtgccagaagta
gccccgaccgaaagtaagccgcgagctccacgtcgccgtgccccacaaactgtgcaggat
gatcaaatcgcttccagcggactggtcatggtagaaaccagccctgataaaatcaaagct
gttgtagaagaagccgtagccgacaaaccggaacgggtgcggccacgccgtgcgccacgc
cctaaaatcgttgaagaaagcgctccgctggtccaggtcgaaacacagtccaagtaa
DBGET
integrated database retrieval system
