Seriola dumerili (greater amberjack): 111218216
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Entry
111218216 CDS
T05606
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111218216 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111218216 (sf3b1)
03036 Chromosome and associated proteins [BR:
sdu03036
]
111218216 (sf3b1)
Spliceosome [BR:
sdu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111218216 (sf3b1)
Complex B
111218216 (sf3b1)
Complex C
U2 SnRNP specific factors
111218216 (sf3b1)
Chromosome and associated proteins [BR:
sdu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
111218216 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
TPR_IMB1
VPS15-like_hel
Adaptin_N
UNC45-central
Motif
Other DBs
NCBI-GeneID:
111218216
NCBI-ProteinID:
XP_022596119
LinkDB
All DBs
Position
Unknown
AA seq
1314 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLLEEGEQGVGLVSTGFFDQEIYGGNDSRFAGYVTSI
AANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAASQAATKRKRRWDQTADQTPSNATPKKMSSWDQADTAAETPGHTPAHTPSN
SRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVNNDEKNIYVRYELEYVL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagatatcgaggcccagatcctggagatccagggg
atgaaggcctccctgctggaggagggagagcagggagtgggccttgtctccactggcttt
tttgaccaggagatctatggaggcaacgacagtcgctttgctggatatgtcacttcaatt
gccgccaatgaacaggaagatgatgatgaagatgatacatcaacaagcttgttgggacaa
aagaagccagggtaccacgcaccagtggcaatactcaatgccattcctcagtcagatgaa
caatatgacccatttgcagagcatcgtcctcagaagatcgcagaacgggaagatgagtac
aaagcccggcgcagacagatgatcatctcacccgagcgtctcgacccgtttgcagacggg
ggcaaaacgccggaccccaagctgcaggtcaggtcgtacgtggacgtcatgttagagcag
aacctgtccaaagaggagagagagattcgtcagcagctggcagagaaggccaaatcaggg
gacctgaaagctgtcaacgggtccgctgcctcccaagcagccacaaaacgtaagcgtcgc
tgggaccagacagctgaccaaaccccttctaatgctacacccaaaaagatgtccagctgg
gaccaggctgacaccgctgctgagactccaggacacacccctgcacacacaccctcaaac
agccgatgggacgaaactcccggtcgccccaaaggcagcgagaccccaggggccactccc
agtacccgcatgtgggaccccacccccagccacacacctgcaggcgccgccacccctggc
agggacacccctggccacgccacacccggccacggtggagccacaggcagcgtgcgcaag
aaccgctgggacgaaaccccgaagacagagagagagaccccgggacacgggagcggctgg
gctgaaacccctcgcacagacagaggagacgagtcggtgggcgagactccgaccccgggg
gcgagtaagaggaagtctcggtgggatgaaacgcctgccagtcagatgggatcctccaca
ccactgctcacccctggaaagactcccataggaacaccagctatgaacatggcgacccca
acgccaggtcacctgatgagcatgactccagagcagctgcaggcgtggaggtgggagaga
gaaatcgatgaaagaaaccggcctctcacagacgaggagcttgatgccatgtttccagag
ggatacaaggtcttgcctccaccagcaggttacgtgccgatccgtactccagcccgtaag
ctgtcggccacacccaccccgatcggaggcatgacgggtttccacatgcaggcggaggac
cgcaccacaaaacagatgaacgaccagccctcaggaaacctccccttcctcaaacccgat
gacatccagtattttgacaagctgctggtggaggtggacgagtccacgctgagtcccgag
gagcagaaggagaggaagatcatgaagctgctgctgaaaattaaaaatggaacgcccccc
atgaggaaggccgctctgcgtcagatcacagacaaggctcgtgaattcggagcaggtcct
ctgttcaaccagatcctgcccctgctcatgtcgcccaccctggaggaccaggagcgccac
ctgctggttaaagtgatcgaccgcatcctctacaaactggatgacctggttcgaccatac
gtgcacaagatcctggtcgtgattgagccgctgctgattgatgaggactactatgccaga
gtagaaggcagagaaatcatctctaacttggcaaaggctgctggtttggccacgatgatc
tccacaatgcgacccgatattgacaacatggacgagtacgtcagaaacaccacggccaga
gccttcgccgtggtggcctccgccctcggtatcccctctctcctgcccttcctcaaagcc
gtgtgtaaaagcaagaaatcctggcaggcccggcacacaggcatcaagatcgtgcagcag
atcgccatcctcatgggctgcgccatcctgccccaccttcgcagcttggtggagattatc
gagcacggtctggtggatgagcagcagaaggtgaggaccatcagcgccctggctattgct
gctctcgctgaagctgctacaccttacggtatcgagtcctttgactcggtcctcaagccg
ctgtggaagggtatcagacagcacagaggaaagggtttggctgctttcctcaaagctatt
ggttacctgatcccactgatggacgctgagtatgcaaactactacaccagggaggtgatg
ctgatcctcatcagagagttccagtcccctgacgaggagatgaagaagattgtactcaag
gtggtgaagcagtgttgtggcactgatggtgtggaagccaactacatcaagactgagatc
ctgccccccttcttcaagcacttctggcagcacaggatggctctggacagacgtaactac
agacagttggtggacaccacggtggagttggccaacaaagtgggagcagctgagatcatt
tctcgcatcgttgacgacctgaaagacgaggcagagcagtacagaaagatggtgatggag
accattgaaaaaatcatgggcaacctgggcgccgccgacatcgaccacaagctggaggag
cagctgatcgacggcatcctgtacgccttccaggaacagaccacagaggactcggtgatg
ctgaacggtttcggcacggtggtgaacgcgctcgggaagcgtgtgaaaccctacctgcct
cagatctgtggtacggtgctgtggcgtctcaacaacaagtcggccaaagtccgtcagcag
gccgctgacctgatctcccgcacagctgtcgtcatgaagacctgccaggaggagaaactg
atgggtcacttgggtgtggtgctgtacgagtacctgggagaggagtaccctgaggtgttg
ggtagcatcctgggagcactgaaggccattgtgaatgttatcggtatgcacaagatgact
ccaccaatcaaagacctgcttcctcgtctgactcccatcctgaagaacagacacgagaag
gtgcaggagaactgcatcgacctggtgggcaggatcgccgacaggggcgctgaatacgtg
tcggccagggagtggatgaggatctgctttgagctgctggagctgctcaaggctcacaag
aaggccatccgcagagccaccgtcaacacgtttggttatatcgccaaagccattggtccc
cacgacgtcttggccactctgctcaacaacctgaaggtccaggagcgtcagaacagagtc
tgcacgaccgtggccatcgccatcgtcgccgagacctgttcgccgttcacggtgctgccg
gcgctcatgaacgaataccgcgtgcccgagctcaacgtgcagaacggcgtgctcaagtcc
ctctccttcctgttcgagtacatcggagagatgggcaaagactacatctacgctgtcacg
ccgctgctggaggacgcgctcatggacagagacctggtccacagacagaccgccagcgcc
gtcgtccagcacatgtctctgggcgtctacggtttcggctgcgaagactcgctcaaccac
ctgctgaactacgtgtggcccaatgtattcgagacgtcgcctcacgtgatccaggcggtc
atgggcgccctggaggggctgagggtggccatcggaccctgccgcatgttgcagtactgc
ttacagggtttgttccatccggccaggaaggtgagagacgtctactggaagatttacaac
tccatctacatcggctcacaagacgccctcatcgcccactacccacaagtcaacaacgac
gagaaaaacatttacgtccgctacgagctcgagtacgtcttgtaa
DBGET
integrated database retrieval system
