Seriola dumerili (greater amberjack): 111220554
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Entry
111220554 CDS
T05606
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111220554 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdu04121
]
111220554 (herc4)
Enzymes [BR:
sdu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
111220554 (herc4)
Ubiquitin system [BR:
sdu04121
]
Ubiquitin ligases (E3)
HECT type E3
111220554 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
111220554
NCBI-ProteinID:
XP_022599380
LinkDB
All DBs
Position
Unknown
AA seq
1047 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRKCEFFHGKQVCDVGCGRRHTTFLLEDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQNIVVVSCGESHTLALNDKGQIFSWGLGSDGQLGLNN
FEECVRVPRNIKSLSDVQITQVACGYWHSHALSRGGQVFSWGQNRYGQLGLGINGQSIST
PQIIQSLQGIPFAQISAGGAHSFALTLSGAVFGWGRNKFGQLGLNDTNDRYFPALLKSLR
SQRVIYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGNVVTQIS
CGRQHTLAFTPSCGKMDSFGLGGNGQLGTRSTCNRKSPAPVKGPWVASNSPADTDSEQSC
CVKRIYAGGDQSFAHYCTATNLQNIDDVRIQDPHRRICTFNEDIIQKWLNHSPGRLPLEI
SNEIDLVFSSASCLNGSFLSMSHPDHYSTSSKCSGVDMNMARILFHRVIQQDHPEIAQQI
AASLEKNLIPRLSSSPPDIEALRLYLTLPECPLFSDRNNYVTIAIPFAKSLLSLKEAALK
VLGNWWSTFEPPVFQWLVEVYKEVVVYLLQMHKVGIPSVEQRIFTCFLDTSLRLLEILHT
VSDRAGHIIQYDKFYIHELDDLIDIRNDYVTWIQRQMYPLGHDGVVTLCRYPFVFDAQAK
TTLLQTDAVIQMQMAVDQAQMQNFSSMFLPAVESVNPCLILIVRRENIVGDTMEVLRKSK
NVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYHEESRLIWFSNKTFE
DIDLFNLIGVICGLAIYNLTIVELNFPVALYKKLLKRKPTLDDLKELMPDVGRSLQQLLD
YTEDDLEETFCLNFTITEENYGATEVLELVQNGEDINVNTSNRQEFVNAYVDYVFNTSVA
PLFECFYAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWTELEKSTEYKGEYWADHPTIR
LFWEVFHCLPLEKKKQFLLFLTGSDRIPILGMKCLKLVIQPTGGGEHYLPVAHTCFNLLD
LPKYTSLETLREKLLQAIDHNQGFNLA
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggaaatgcttcctacggacagctgggcttgggtgggattgatgaggag
attgtggttgagccacgaaaatgtgaattctttcacgggaagcaagtgtgtgatgtgggg
tgtggccggagacacacaaccttcctgctggaggatgggacagtatacacctgtggctgc
aatgacctagggcagctgggacatgagaagtccagaaagaaaccagaacaggttgtggct
ctggatgcacaaaacatagtggtggtgtcatgtggagagtcccacacactcgccctgaat
gacaaagggcagattttttcatggggtcttggctcagatggacagctcggcctaaataac
tttgaagaatgtgttcgtgtgcctagaaacatcaagagtttgtcagacgtacaaatcact
caggtagcctgtgggtattggcactcccatgcactttcaagaggaggccaggtcttctcc
tggggccagaatcgatatggacaacttgggctgggaattaatggacaaagcatttccaca
ccccaaatcattcagtctctgcagggcattccttttgctcagatatcagcaggtggtgct
cacagctttgccctcactctctcaggagcggtgtttggttggggtcgcaacaagtttggt
cagctgggtctcaatgacaccaatgatcgatatttcccagccctgctgaagtcccttaga
tcgcagagagtgatttacatctcctgtggagaagatcacacagcagcactgaccaaggaa
ggaggtgtgtttacatttggagcaggaggatacggacaactgggacataactctacaaac
catgaaatcaaccctaggaaagtgtttgagctcatgggaaatgtagttacacagatttca
tgtggaaggcagcacactttggctttcacaccctcctgtgggaagatggactcctttggg
cttggtggtaacgggcaacttggtacacgctccacttgtaacaggaaaagccccgccccc
gtcaaaggtccctgggtagcctccaattctcctgcggatacagactcggagcagagctgt
tgtgtcaagaggatttatgctggaggagatcagagttttgctcactattgcactgccact
aacctccagaacatagatgatgtgaggatacaagatcctcacagaaggatttgcaccttt
aatgaggatatcatacaaaaatggttgaaccattcaccaggaagactcccgctggaaatc
tccaatgagattgacctcgtgttctcctcagcaagctgcctcaatggatcttttctctca
atgagtcatccagatcactacagtaccagcagcaaatgttcaggggttgatatgaacatg
gctcgcatcctctttcacagagtcattcaacaagatcaccctgagatagctcagcagatt
gctgccagtctggaaaagaacctcattcccagactgagcagctctcctccagacattgaa
gccctgagactctacctcactctcccagaatgccctctcttcagtgaccgaaataattat
gtgactattgccatcccatttgccaaatcactcctcagcctgaaagaggctgcactgaag
gttctaggaaactggtggtctacgtttgagccccccgtcttccagtggcttgttgaggtg
tacaaggaggtggtggtgtatctgcttcagatgcacaaggtgggcattccttcagtagag
cagagaattttcacctgtttcctggacacgtccctgcgactcctggagatcctgcacacg
gtgagtgacagagcaggacacatcattcagtatgataaattctacatccatgagttggat
gacctgatagacatcagaaatgactacgtcacatggattcagaggcagatgtacccactg
ggtcatgacggtgtggtgactctgtgcaggtatccctttgtatttgatgcccaagcgaag
accactctgcttcaaactgatgctgtgatccagatgcagatggcagtggaccaggcgcag
atgcagaacttcagctccatgttcctgccagcagtggaatctgtcaacccgtgcctcatc
ctcatcgtccggagggaaaatattgttggcgacaccatggaagtcctcaggaagtctaag
aatgttgactacaagaaaccgctgaaggtgatctttgtgggagaagaggcggtcgatgca
ggaggtgtgagaaaggagttcttcctcctgatcatgaaagagctgttggatcccaaatac
ggcatgtttcgttaccacgaggagtccaggctcatctggttttcaaacaagacctttgag
gacattgacttgttcaacctcattggggtcatctgtggtctggccatctacaatctcacc
atagtggagctcaacttccccgtggccctttacaagaaacttctgaagaggaagccaacg
ctagacgacctgaaagagctaatgccagatgtgggaaggagtctgcagcagttgctggac
tacacggaggatgaccttgaggaaacgttctgcttgaatttcacaatcacagaggaaaac
tatggtgccacagaggttttggaactagtacagaacggcgaagacatcaatgtcaataca
tcaaacaggcaggaatttgtcaatgcctatgttgactatgttttcaacacgtcagtggcc
ccactgtttgagtgcttctatgcaggctttcacaaagtgtgcggtggaaaagttttagag
ctgttccagccaaacgaactgcaagccatggtcattggcaacaccaactatgactggacg
gagcttgaaaagagtactgaatacaaaggggagtactgggcggaccatcccaccatcagg
ctcttctgggaggtgttccactgtcttcctttagagaagaaaaaacagttcctcttgttc
ctcacaggaagtgaccgcatacccatcttgggcatgaaatgcctgaaactggtgatccag
cccaccggtggaggggagcattatttacctgtcgcccacacgtgcttcaacctgctggac
ctgcccaaatacacaagtctggaaacactccgtgagaagcttctacaggctatagatcac
aatcaaggctttaatcttgcctga
DBGET
integrated database retrieval system
