Seriola dumerili (greater amberjack): 111220864
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Entry
111220864 CDS
T05606
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03013
Nucleocytoplasmic transport
sdu03015
mRNA surveillance pathway
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111220864
09122 Translation
03013 Nucleocytoplasmic transport
111220864
03015 mRNA surveillance pathway
111220864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111220864
03041 Spliceosome [BR:
sdu03041
]
111220864
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111220864
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111220864
Spliceosome [BR:
sdu03041
]
Complex C
Other components
EJC/TREX
111220864
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111220864
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
111220864
NCBI-ProteinID:
XP_022599840
LinkDB
All DBs
Position
Unknown
AA seq
432 aa
AA seq
DB search
MTENDVDNELLDYEEDEVEAAGVGDVGGGGDMSIRKEGVKGSYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV
LVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKKDCPHIVVGTPGRI
LALTRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR
PVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDALEFNQVVIFVKS
VQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNISELPD
EIDISSYIEPAR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgtggacaacgagctgttggactatgaggaggacgaggtggaggct
gcaggggttggggatgttggaggtggaggtgacatgtcgataaggaaggagggagtgaag
ggttcctatgtgtccattcactcctctggattcagagacttcctgctgaaacctgagctg
ctcagagccatagtggactgtgggtttgagcatccatctgaggttcagcatgaatgcatc
cctcaggcaatccttggtatggatgtgctctgtcaggccaagtctgggatggggaagact
gcagtgtttgttctggccaccctgcagcagctggagcccgtcactggacaggtgtcggtc
ctggtgatgtgccataccagagagctggcctttcaaatcagcaaggagtatgagagattt
tcaaagtacatgcccactgtcaaggtggcagtgttctttggagggctgtctataaagaag
gatgaagaggtgctaaagaaggactgtcctcatatcgtggtggggacaccaggcaggatc
ctggcactgacacgcaacaagacactcaacctgcgtcacatcaaacatttcatcctggat
gagtgtgacaagatgctcgagcagcttgacatgcgcagagacgtccaggagattttccgt
atgactccccatgagaagcaggtcatgatgttcagcgccactctgagcaaagagatccgt
ccagtctgcagaaagttcatgcaagatccgatggaaatctttgtggacgatgagaccaag
ctgactctgcacgggctgcagcagtactacgtcaagctgaaggacaatgagaaaaacaga
aagctctttgacctccttgatgcactagagttcaatcaggtggtgatctttgtcaagtct
gtccagcggtgtgtagctctggctcagcttctggtggagcagaacttcccagcgattgcc
atccatcgagggatgcctcaggaggaacgtttgtctcgctaccagcagttcaaggacttc
cagaggagaatcctggtggccaccaacctgtttggacgagggatggacatcgagagagtc
aatattgcctttaactacgacatgccagaggactccgacacttacctacacagggtggcc
cgggcaggcaggttcggaacaaagggcctggccatcacgtttgtgtcagacgaaggtgac
gcccgcacgctcaatgatgtccaggaccgcttcgaggtgaacatcagcgagctgccagac
gagattgacatctcctcttacattgaaccggcgcgatag
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