KEGG   Seriola dumerili (greater amberjack): 111226470
Entry
111226470         CDS       T05606                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    111226470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:sdu03000]
    111226470
   04121 Ubiquitin system [BR:sdu04121]
    111226470
   03036 Chromosome and associated proteins [BR:sdu03036]
    111226470
Enzymes [BR:sdu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     111226470
Transcription factors [BR:sdu03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    111226470
Ubiquitin system [BR:sdu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     111226470
Chromosome and associated proteins [BR:sdu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    111226470
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     111226470
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like F-box DUF7885 PHD
Other DBs
NCBI-GeneID: 111226470
NCBI-ProteinID: XP_022607368
UniProt: A0A3B4VIM9
LinkDB
Position
Unknown
AA seq 779 aa
MALSLSGDDEEYDSESEQQRAANRPKPKMGTSSAVKLPSNRSSSGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEDK
FNFMLMECSICNEIVHPHCLKVSDASGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPVKEEGDASSAAKRRPDREETPRYRPEESLRQPPLLSPSSLPRPR
PEDKLRKKRKLFEDDEEEDLSVRKKEKSDDPYFSKLLHQIKTEEEDEDAYEEEDEEGREL
HFRSGVERKGRFGDAEDERDDKDSKNELLNPCIKTPIGDSDQSHCSSPQAGPSSEGGSET
QEKGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPETENEEPKR
LFRNGNELGDQRPHLKTKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPRSPPKCVQ
MERHVIRPPPISPPPDRLPLKDGKTHVIQREVWMKIFGYLTHQELCVCMRVCKTWNRWCC
DKRLWMRIDLNRCTSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRVLKLS
GCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVED
LRLAGLDITDTSLRLISRQMPLLSRLDLSYCNHINDQSVNLLTAAGTTTRDSLTEINLSV
CNRVTDHSLNFFKRCGSICQIDLRFCKQVTKTACERFIAEMSVSVPFRLKEDKLLQKTS
NT seq 2340 nt   +upstreamnt  +downstreamnt
atggccttgtcattgagcggagacgacgaggaatatgattcagagtctgagcagcagcgg
gctgccaaccgaccaaagcccaagatggggacgtcgtcagccgttaagctgccgtccaac
cgcagctcatctggcgccagacgcaggaggacacgctgccgaaagtgcgaggcgtgcctc
cgaaccgagtgtggagagtgtcacttctgcaaggacatgaagaagtttggagggccaggg
cgcatgaaacagtcctgcattatgagacaatgcatcgcgcccgtcctgccccacacggca
gtgtgtgtggtgtgtaaagaggcagggaaggaggacaccctggaggaggaagaggacaag
ttcaacttcatgctgatggagtgctccatctgcaacgagatcgtccatccacactgcctc
aaggtgagcgatgcgtctggagtggtgaacgatgaactgcctaactgctgggaatgtccc
aaatgcaaccatgctgggaaaagtggaaaagtattgaagcaaaaaaggggtccaggcttt
aagtacgcctccaacctccctggctctctgctgagggaacagaagcctgtgaaggaggag
ggagacgcttcttctgcagccaagaggagaccagacagagaggaaacacccaggtacagg
ccggaggagtctctccgacagccaccactgctctccccaagcagcctgcccaggcccagg
cctgaggacaaactgaggaagaagaggaagctgtttgaggacgatgaggaagaggatctc
agtgtgaggaagaaggaaaagtcagatgatccttatttttctaaacttctgcaccaaatc
aagacagaagaggaggacgaagacgcatatgaggaggaggatgaagaaggaagggagctt
cacttccggagtggtgtagagaggaaagggcgttttggagatgctgaagacgaacgggat
gacaaggactccaagaatgaacttttgaatccctgcattaaaacacccattggagacagt
gaccagtctcactgcagctctccgcaggctggccccagcagtgagggcggaagcgagacc
caggaaaaaggtcctcgtccaaaagctcgccgtaagcgccgtttacctaacagggagctg
agccgagaactgagcaaagcactgaatcaggaaatccagaagacggaggactgcctggcc
aacgagaaccgccaacccctcaaggtggagccggagacggaaaacgaggaacccaaaagg
ttgtttcgcaacggcaatgaactcggggatcagaggccccacctcaagaccaaagagatg
aatgggaccccgtgggagctgcgccacttctacccgagtcagatcactccactaggcttc
aacaggagcaccccaaccaaccggccggtgcccccacgctcccctcccaagtgtgtccaa
atggagcggcacgtcattcggccacctccgataagcccgcctcctgacagactgcctcta
aaagatggtaaaacacacgtcatacagcgcgaggtctggatgaagatctttggctatctc
acacaccaggagctgtgtgtgtgcatgagagtttgcaagacgtggaacagatggtgttgt
gacaagagactttggatgaggatcgatttgaaccgctgcacctccatcactccactcatg
ctaagcgggattatccgccgacagccagtttcccttgacctcagctggaccaacatttcc
aagaagcaattaagctggcttattaatagattgccaggtctgcgagtgttaaagttatca
gggtgttcttgggctgctgtatctgcgctctgcacctccagctgccctctgctgcgcacc
ctggatgtccagtgggtggagggacttaaagacgcgcagatgagggacctcctctcaccc
cccacagacaacagaccaggtcaactggataaccgctgcaagctgcggaatgtggaggac
ctgcggctggcggggctggacatcaccgacacgtcattacgtctgatcagtcggcagatg
cctttgctgtccagactcgacctgagctactgcaaccatatcaacgaccagtcagtcaac
ctactgacagcagcaggaaccacgaccagagactctctcacagaaatcaacctctctgtt
tgcaaccgggtcacagaccattccctaaactttttcaagcgctgtggaagcatctgtcag
atagaccttcgcttctgcaagcaggtgaccaagacggcctgcgaaaggttcatcgcagag
atgtctgtgagcgtaccatttagactgaaagaggacaaactgctgcagaagacaagctag

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