KEGG   Seriola dumerili (greater amberjack): 111227833
Entry
111227833         CDS       T05606                                 
Symbol
seh1l
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03013  Nucleocytoplasmic transport
sdu04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    111227833 (seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    111227833 (seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdu03019]
    111227833 (seh1l)
   04131 Membrane trafficking [BR:sdu04131]
    111227833 (seh1l)
Messenger RNA biogenesis [BR:sdu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     111227833 (seh1l)
Membrane trafficking [BR:sdu04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    111227833 (seh1l)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 EIF3I WDR55 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 111227833
NCBI-ProteinID: XP_022609278
LinkDB
Position
Unknown
AA seq 415 aa
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSENGEWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHPP
MFAVGSDDNNVTYGGKVQIYEYNENTRKYAKAETLMTVTDAVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLVPMRKESASTGPTKFEVQIMAQFDNHNSQVWRVSWNITSTLLASSGDDGC
VRLWKANYMDNWKCTGILKGDGSPLTSSSGQPTAMSTVVGSSVQTSQNALNGMSAGRYFF
PPLDPPRAGTRYGHLLPPSSLIEHCDAEPIQPQQQALPHRHSSRALLPLPEAEGQ
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgtttgtagcgcggagtatcgcagcagatcataaagatctaatacacgatgtgtcgtat
gatttccacggccggcgaatggcaacttgctccagtgaccaaagcgtcaaggtttgggac
aaaagtgaaaatggagagtggcactgcacggccagctggaagacacacagcgggtcagtg
tggagagtgacctgggctcatccagagtttgggcaggttctagcttcctgctccttcgac
aggacagctgctgtctgggaagagattgtaggggagtcaaatgacaaacagagaggactg
agccactggataaaaagaaccacattagtagacagtagaacttcagtgactgatgtgaag
tttgcccctaaacacatgggcctgatgttgaccacctgctctgcggacggagtggtgagg
atttacgaggctcctgatgttatgaacctgagtcagtggtccctgcagcacgagatctcc
tgcaagctcagctgcagctgcatctcgtggaatccctccagctctcgtgcccacccgccg
atgtttgcagtggggagtgacgacaacaatgtaacatatggtggcaaagttcagatctat
gagtacaatgaaaatacaaggaaatatgctaaagcagagacgctgatgaccgtcactgat
gcggtccatgacattgcatttgctccaaacctggggagatctttccacgtccttgccatt
gcaacaaaagacgtccgaatctttaagcttgttccaatgaggaaggagagcgcctctaca
ggacccaccaagtttgaggtgcagatcatggctcagtttgacaaccataactcccaggtg
tggcgtgtgagctggaacatcaccagcaccctgctggcctcctccggggatgacggctgt
gtgcgcctatggaaagcgaactacatggacaactggaagtgcaccggcatcttgaaggga
gacggcagcccactcaccagctcatccggtcagcccacagccatgagcaccgtggtgggc
tcctctgttcagacctcccagaatgcactgaatgggatgtctgcaggaaggtatttcttt
ccacctctggatcctcccagagcggggaccaggtatggtcacctgctgcctccctcctcc
ctcatagagcactgtgatgctgagcccattcagcctcaacaacaggctcttccccacaga
cactcctctagagcactgctgcccttaccagaggctgaaggacagtaa

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