Seriola dumerili (greater amberjack): 111236686
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Entry
111236686 CDS
T05606
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
111236686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111236686
03041 Spliceosome [BR:
sdu03041
]
111236686
03036 Chromosome and associated proteins [BR:
sdu03036
]
111236686
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111236686
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111236686
mRNA cycle factors
Common to processing body (P body) and stress granule
111236686
Spliceosome [BR:
sdu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111236686
Chromosome and associated proteins [BR:
sdu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111236686
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-GeneID:
111236686
NCBI-ProteinID:
XP_022621223
LinkDB
All DBs
Position
Unknown
AA seq
753 aa
AA seq
DB search
MSHVAVENAHGLEQQLAVLDLSAADGQGGGTNRRYIPPHLRNKDASKNAGNAFAAGRQGV
YTMAPPANYGWDGGRNNFVNGYHDNRMTGNSFNRGPPRMERGRGGVGGGGYRGNRGGSFN
PINPAQPMGFGGYENKDASGWNTNKDAYSSFGNNRGKSAFFNDRGNANRGRFEHGGFGGG
GGGGNSRWVEESRDDGDWSKPTPRNERLEHELFSGSNTGINFEKYDDIPVEATGQNCPHH
IESFQDVDMGEIVMGNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPI
LSQIYTDGPGEALNAVKSSGQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSR
VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLD
MGFEPQIRRIVEQDTMPHKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSEN
ITQKVVWVEESDKRSFLLDLLSATVIPSEVQDNTGDNIEKPGKDSLTLVFVETKKGADAL
EDFLYREGYACTSIHGDRSQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVINFD
LPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYE
HQHKSSNRGRSKRFSGGFGARDYRQTAAGANTGGFGGRGGRNQAGHGGTRGFGGGGFGNF
YTSDGYGGNYSHSQVDWRQCVNAVTGELLANQK
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgcccacggtctagagcagcagcttgctgtcctagac
ttgagtgcagcagacggacaaggtggaggcactaacaggcgatacattcctccacattta
cggaacaaagacgcttccaaaaatgcaggaaatgcctttgctgctggtcgacaaggtgtc
tacaccatggcgcctccagccaactatggttgggatggggggcgcaacaactttgttaat
ggctaccatgacaaccggatgacgggcaactcatttaaccggggcccacctcgtatggag
cggggcagaggtggcgtcggaggaggtggttaccgtggcaacaggggaggatccttcaat
cccattaacccagcgcaaccaatgggatttggtggctacgaaaataaagacgccagcggc
tggaacacgaacaaggatgcctacagcagttttggaaacaatcgagggaagtctgcattc
ttcaatgacagaggcaatgcgaacagagggaggttcgagcatggtggatttggtggtgga
ggaggaggaggaaacagccgctgggtggaagagtccagagatgacggagactggtccaaa
ccaacaccacgtaacgaacgccttgaacatgagttgttctctggcagtaacactgggatt
aattttgagaaatacgatgacattcctgttgaagccacaggacagaactgccctcaccac
attgagagtttccaagatgtggacatgggtgagattgtcatgggtaacatagctctgagt
cgctacaccagaccaacgcctgtccagaaatatgccattcctattgtcaagtcaaagaga
gacctcatggcctgcgcacagacaggttctgggaagactgcggcattcctgctgccgatt
ctcagccaaatctacactgatggaccaggagaagctcttaatgcagttaaatcctctgga
caggagaatgggaagtatgggcgtcgtaagcagtaccccatctctctggtactggctcca
accagagagctggcattgcaaatatacgatgaagccaggaagttttcctaccggtccaga
gtgcgtccctgtgttgtgtatggaggagcagatattggccagcagatcagagatctggag
agaggctgccacctgctggtggccacaccgggaagactggtagacatgatggagaggggc
aagattggactggactactgcaactacctggtcctggatgaggcagatcgtatgttggac
atgggctttgaaccgcagataagacgcatcgtcgaacaagacaccatgccgcataaaggc
atccgacaaaccatgatgttcagtgctacctttcctaaagagatccagattctggccagg
gatttcctggaggagtacattttcctggcagtgggcagggtgggttccacctcagagaac
atcactcagaaagtggtgtgggtggaagagagcgataagaggtctttcctcctggacctg
cttagtgctacagtcatccccagcgaggtacaggacaatactggagacaacatagagaaa
cctggtaaggactcgttgactctggtttttgtggagaccaagaaaggtgctgatgccttg
gaggacttcctgtaccgggagggctacgcatgcaccagtatccatggcgaccgctcccag
agagaccgagaggaggccctgaaccagttcagatcaggaaaatgccccattctggtggcc
acagcggtagcggctcggggtctagacatctccaatgtgaaacatgttattaactttgac
ctgcccagcgacatagaggagtatgtccaccgtattggacgtacaggacgagtcggaaac
ctgggacttgccacatcgttcttcaatgataagaacgggaacatcactaaagacctgctg
gacatcctagtagaggccaaacaggaagtgccctcatggcttgagagcctggcctatgaa
caccagcataagagcagcaacagaggacgctctaagaggttctctggaggctttggagca
cgtgattatcgccagaccgctgctggagccaacactggagggtttggaggacgaggaggt
cgcaaccaggcaggacatggaggaacccgtggcttcggaggaggtggttttggtaacttc
tacaccagtgatggctacggaggcaactactcacactctcaagttgactggcgtcagtgt
gttaatgctgtcacgggggagcttctggccaatcagaaatga
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