KEGG   Solanum dulcamara (climbing nightshade): 129896713
Entry
129896713         CDS       T09577                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03013  Nucleocytoplasmic transport
sdul04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    129896713
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    129896713
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdul03019]
    129896713
   04131 Membrane trafficking [BR:sdul04131]
    129896713
Messenger RNA biogenesis [BR:sdul03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     129896713
Membrane trafficking [BR:sdul04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    129896713
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    129896713
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    129896713
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_Vps41 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_HPS5 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_NOL10_N WD40_RFWD3 DUF4987
Other DBs
NCBI-GeneID: 129896713
NCBI-ProteinID: XP_055828641
LinkDB
Position
7:2136042..2139086
AA seq 301 aa
MPSQKIESGHTDTVHDVAMDYYGKRLATASSDCTIKITGVSSSSSQQLATISGHQGPVWQ
VAWAHPKFGSLLASCSSDGKVIIWKEGTQNEWSLARVFDDHKASVNAIAWAPHELGLCLA
CGSSDGNISIFTARSEDVWETLRIDQAHPVGVTSVSWAPSTAPGSLVGSELLNPVPKLAS
GGCDNTVKVWKLFDGIWKLDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGRVIIW
TVGKEGNQWEGKVLKDFGAPVWRVSWSLTGNILAVANGNNNVTLWNEAVDGEWQPVTTVD
T
NT seq 906 nt   +upstreamnt  +downstreamnt
atgccttcacagaagatagaaagtgggcatactgacacggtccacgatgtggcaatggat
tactatggtaagcgtctggcaacagcttcttccgactgcaccattaagataacaggggtc
agcagttcgtcttcgcagcaactggctactataagtggtcaccaaggaccagtgtggcaa
gtagcttgggctcaccctaagtttggttccctccttgcttcttgttcttctgatggaaag
gtaattatctggaaggaaggtactcaaaatgagtggagcttagcacgtgtttttgatgac
cataaagcttcagtcaatgcaatagcttgggctcctcatgaattgggcctttgtttggct
tgtggatcttctgatgggaacatttccattttcactgcaagatcagaagatgtgtgggag
acattacgaatcgatcaggctcatccagtaggtgttacatctgtttcgtgggcgccatca
acagctcctggctctcttgtaggctctgaactgcttaatcctgttccaaagcttgcatct
ggtggctgtgacaatacagttaaagtgtggaagctttttgatggaatttggaagttggat
tgcttcccagctcttcaaatgcacactgattgggtcagggacgtcgcttgggcccctaac
ttggggctaccaaagtcaactatcgcgagtgcttctgaagatggaagagtgattatatgg
accgttggtaaagaaggcaatcaatgggagggcaaagtgttgaaggattttggtgccccc
gtttggagagtttcatggtcgctaacaggaaacatactggctgtggctaatggcaataac
aatgtgacattgtggaacgaagcagtggatggtgaatggcaaccagtgacgacagtagat
acataa

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