Solanum dulcamara (climbing nightshade): 129901132
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Entry
129901132 CDS
T09577
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129901132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129901132
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129901132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Peptidase_M15
Motif
Other DBs
NCBI-GeneID:
129901132
NCBI-ProteinID:
XP_055832224
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Position
8:5153300..5158077
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AA seq
255 aa
AA seq
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MAGKTGSTPATYSPSPATHKKKRIPITDADWVRPDNRGFYQCRPAYLRTGAVSTAAGSAY
AEFGNTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTSFSTPNRGQGSDNKELSSMLHKA
LEGVIILESFPKTCVDVFALVLESGGSDLPVVISCASLALADAGILLYDLVASVSVSCLG
KNLVIDPIFEEESYQDGSLMITCMPSRNETTQLIVTGGWSTPKINEAMELCLGACFKLGE
VMRSCLKDAVTDLKE
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaacagggtcgacgccagcgacctattcaccatctccagcaacgcacaag
aagaagagaatccccattactgatgctgattgggttcgtcctgataatcgtggcttctat
cagtgccgtcctgcttatctgaggactggtgctgtgagtactgctgcaggatcagcatat
gcagagtttggaaacaccaaggtcatcgtatctgtgtttgggccaagggaaagtaagaaa
gcaatgatgtacagtgatacaggacgcttaaattgtaatgttagttacacaagtttttcc
acccctaatcgtgggcagggatcagacaacaaggaactttcctcaatgttacacaaagct
ttagagggtgttataattctggaatccttcccaaagacttgcgtggatgtttttgctttg
gtattggaatccggtggaagtgatctccccgtggtcatatcatgtgctagtctagcttta
gcagatgcaggaattttgctgtatgacttggttgcctcagtttcggtatcttgtcttgga
aagaaccttgtcatcgatcccatttttgaggaagaaagctaccaagatggaagcttaatg
ataacttgtatgccttcgcgtaatgagaccactcaactgattgtaactggaggatggtca
acaccaaagattaacgaggcaatggagctatgccttggtgcttgcttcaaacttggagag
gtaatgagatcatgtttaaaagatgctgtcactgatttaaaagaatag
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