Streptomyces decoyicus: K7C20_16675
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Entry
K7C20_16675 CDS
T07553
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdw
Streptomyces decoyicus
Pathway
sdw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K7C20_16675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdw03021
]
K7C20_16675
03400 DNA repair and recombination proteins [BR:
sdw03400
]
K7C20_16675
Enzymes [BR:
sdw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K7C20_16675
Transcription machinery [BR:
sdw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K7C20_16675
DNA repair and recombination proteins [BR:
sdw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K7C20_16675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
QZY16687
LinkDB
All DBs
Position
complement(3821713..3825612)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEERRTRDLPSLEAHVSVERQQIEQRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLETFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTRNSPKGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEERKVIGE
GRAFGSTAEAIMAFDAKELSLQAKVDIRFPIGTVPPRGWTPPVPEEGEPEWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSAIVNDLAERYPKVIVAATLDNLKAAGFHWAT
RSGVTVAVSDIVVPEAKKAIVAGYEAQDEKVQKQYERGLITKDERTQELINIWTKATNEV
SEAMNENFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLRIASKD
AAGVLRKADDVESSVYARMLAEDVVVDGKVVAPANVDLGDVLIDALVNAGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
LGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKVIVTPDDGSDEMPYGVSKRARL
LVGEGDHVTVGQPLTVGAVNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVAIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERTKFEGENRRVVAEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccggatcggtctggctaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtcctacgcgggactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctcgccgcgccc
gtgacgcacatctggtacttcaagggtgtgccgagccggctgggctacctgctggacctc
gcgcccaaggacctcgagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gaggagcgtcgtacgcgtgacctgccctcgctggaggcgcacgtctccgtcgagcgtcag
cagatcgagcagcgtcgtgactccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctcgaggccgagggtgccaaggccgacgtgcgccgcaaggtgcgcgagggt
gccgagcgtgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtctggaaccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctccatgggtgccgctgcc
ctgcagaagcgcctggagaccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagacccgcaacagccccaagggcatggtgctggactgcatcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtggacgcc
ctcttcgacaacggtcgtcgcggtcgcccggtcaccggtcccggtaaccgccccctgaag
tccctcagcgacatgctgaagggcaagcagggccggttccgtcagaacctgctcggtaag
cgagtcgactactcggcgcgttccgtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
acggtcgtctacgacgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcacccaccctgcaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccattcagattcacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctcccgctctccgcggaggcccaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggtgctcggcctcttcttcctcaccacggatgaagaggagcgcaaggtcatcggcgag
ggccgggcgttcggctcgaccgccgaggcgatcatggcgttcgacgccaaggagctctcg
ctccaggcgaaggtcgacatccgcttcccgatcggcaccgtcccgccccgtggctggacc
ccgccggttccggaagagggcgagcccgagtggcagcagggcgacagcttccggctgcgg
acgaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgcgatcgtcaacgacctggccgagcgctacccg
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttccactgggcgacc
cgttccggcgtcaccgtcgccgtctcggacatcgtcgtgccggaggccaagaaggccatc
gtcgcgggctacgaggcccaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggaactcatcaacatctggaccaaggcgaccaacgaggtc
tccgaggcgatgaatgagaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcggcagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcgtccgatcaaggcgtcgttccgcgagggtctgtcc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctggcggacaccgccctt
cgtaccgccgactccggttacctcacccgtcgtctggtcgacgtctcccaggacgtcatc
attcgcgaggaggactgcggcacggagcgtggcctcaagctgcggatcgcctcgaaggac
gccgcaggcgtgctgcgcaaggcggacgacgtcgagtccagcgtctacgcacgcatgctg
gccgaggacgtcgtcgtcgacggcaaggtcgtcgccccggcgaacgtcgacctcggtgac
gtgctcatcgacgccctggtcaacgcgggcgtcgaggaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggccgttcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
ctgggtctgccgcgtgtcgtcgagctcttcgaggcccgtacgcccaagggtgtcgccccg
atctcggaggcggccggccgcgtccgtatcgaggagaccgagaagaccaagaaggtcatc
gtcaccccggacgacggcagcgacgagatgccctacggcgtctccaagcgtgcccgtctc
ctggtgggcgagggcgaccacgtcacggtcggccagccgctgaccgtgggtgccgtcaac
ccgcacgacgtgctgcggatcctcggccagcgtgccgtccaggtccacctggtcggcgag
gtccagaaggtctacaacagccagggcgtggcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgtgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctggtggagcgcacgaagttcgagggcgagaaccgtcgcgtcgtggcggaaggc
ggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcttcgctggccacc
gagtcctggctgtcggcggcgtccttccaggagacgaccagggtcctgaccgacgcggcg
atcaacgccaagtcggactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctgtcccgctaccgcaacatccgggtcgagcccaccgaagag
gccaaggccgcgatgtactcggccgtcggttacgacgacatcgactactcgcccttcggc
accggctccggccaggcggtcccgctggaggactacgactacggtccgtacaaccagtaa
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