Streptomyces decoyicus: K7C20_16680
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Entry
K7C20_16680 CDS
T07553
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sdw
Streptomyces decoyicus
Pathway
sdw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K7C20_16680 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdw03021
]
K7C20_16680 (rpoB)
03400 DNA repair and recombination proteins [BR:
sdw03400
]
K7C20_16680 (rpoB)
Enzymes [BR:
sdw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K7C20_16680 (rpoB)
Transcription machinery [BR:
sdw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K7C20_16680 (rpoB)
DNA repair and recombination proteins [BR:
sdw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K7C20_16680 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QZY16688
LinkDB
All DBs
Position
complement(3825709..3829194)
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNGDSTAPLRISFAKIKEPLGVPNLLALQTESFDWLLGNAAWKGRVEA
ALESGQEVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFCINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGGDEPLDAGVLTTDDVIATIKYLVKLHAGETETMGESGRSIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQTNPLSGLTHKRRLSALGPGGLSRERAGLDVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNVFGFIETPYRKVVDGQVTEEVDYLTADEEDRFLIAQANAKLSEDMRF
SEQRVLVRRRGGEVDLVPADEVDFMDVSPRQMVSAATAMIPFLEHDDANRALMGSNMMRQ
AVPLIKAESPLVGTGMEYRCAVDAGDVIKAEKDGVVQEVSADYITVANDDGTYTTYRVAK
FTRSNQGTSFNQKVVVDEGARVIEGQVLADGPSTDEGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLSDLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASQGWKVEGVEEEWKKRLHSISADEVAPGSNVATP
VFDGAREDEISGLFESTIPNRDGERMVKGSGKARLFDGRSGEPFPDPISIGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgactgccaatacgaacaacggcgacagcaccgccccg
ctgcgcatctcttttgcgaagatcaaggagcccctcggggttccgaacctccttgcgctg
cagaccgaaagcttcgactggctgctcggcaatgccgcatggaagggtcgcgtcgaggct
gcgctggagagtgggcaggaagtccccaccaagtccggtcttgaagagatcttcgaagag
atctccccgatcgaagacttctccgggtcgatgtcgctgacgttccgcgaccaccgcttc
gagcccccgaagaactccatcgacgagtgcaaggagcgcgacttcacgtacgccgctccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgacgaacaagggcaccttctgcatcaacggcaccgag
cgtgtcgtcgtttcgcagcttgtccgctcgccgggcgtgtacttcgacagctccatcgac
aagacgtccgacaaggacatcttctccgccaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtgcgcatcgaccgtaagcgcaagcag
tccgtgaccgttctgctcaaggctctcggttggacgaccgagcagatcctcgaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccgccgacccgtgaggccgcg
cagacgctgctcgagaacctctacttcaaccccaagcgctacgacctcgccaaggtcggc
cgctacaaggtcaacaagaagctcggcggcgacgagccgctcgacgcgggcgtgctgacc
accgatgacgtcattgcgacgatcaagtacctggtcaagctgcacgccggcgagaccgag
acgatgggtgagtccggccgttcgatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgtcgtctgcgcaacgtcggtgagctcatccagaaccaggtccgcacgggtctggct
cgtatggagcgcgtcgtgcgtgagcgcatgaccacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagaccaacccgctgtcgggtctgacccacaagcgccgt
ctgtcggcgctgggcccgggtggtctctcccgtgagcgggccggcctggacgtccgtgac
gtgcacccctcgcactacggccgcatgtgcccgattgagacccctgaaggtcccaacatc
ggtctcatcggctcgctggcctcctacggccgggtcaacgtcttcggcttcatcgagacg
ccctaccgcaaggtcgtcgacggccaggtcaccgaggaggtggactacctcacggctgat
gaggaggaccgcttcctgatcgcccaggccaacgcgaagctctccgaggacatgcggttc
tccgagcagcgtgtcctggtccgccgtcgtggcggcgaggtcgacctcgtccccgccgac
gaggtggacttcatggacgtctcgccgcgccagatggtgtcggccgcgaccgccatgatt
ccgttcctcgagcacgacgacgccaaccgtgcgctcatgggatcgaacatgatgcgccag
gccgttccgctgatcaaggcggagtccccgctggtcggcaccggcatggagtaccgctgt
gcggtcgacgccggtgacgtcatcaaggcggagaaggacggtgtggtccaggaggtctcc
gcggactacatcaccgtcgccaacgacgacggcacgtacaccacgtaccgcgtcgccaag
ttcacccgctccaaccagggcacctccttcaaccagaaggtcgtcgtggacgagggcgcg
cgggtcatcgagggccaggtcctcgccgacggtccgtccacggacgaaggcgagatggcg
ctcggcaagaacctgctcgtggcgttcatgccgtgggagggccacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctgggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctctccgacctcgacgagcgcggcatcatccgtatcggtgcc
gaggtcgtcgccggcgacatcctcgtcggcaaggtcacgcccaagggtgagaccgagctg
acccccgaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtgcgcgac
acctcgctgaaggtgccgcacggtgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgcgaagagggcgacgagcttcccccgggcgtgaaccagctggtccgcgtctatgtcgcc
cagaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaagggcgtc
atctcgaagatcctgccggtcgaggacatgccgttcctcgaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtcccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccagggctggaaggtcgagggtgtcgaggaggagtggaag
aagcgtctccactcgatctccgccgacgaggtcgcccccggctccaacgtcgccaccccg
gtgttcgacggtgcgcgcgaggacgagatctccggtctcttcgagtcgacgatccccaac
cgcgacggcgagcggatggtcaagggctccggcaaggcgcggctgttcgacggccgctcc
ggtgagccgttcccggacccgatctcgatcgggtacatgtacatcctcaagctgcaccac
ctggtcgacgacaagctgcacgcgcgttcgaccggtccgtactcgatgatcacccagcag
ccgctgggtggtaaggctcagttcggtggccagcggttcggtgagatggaggtgtgggcg
ctggaggcttacggcgccgcatacgccctccaggagctgctgacgatcaagtccgacgac
gtgaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccc
ggcattcccgagtccttcaaggtgctcatcaaggaaatgcagtccctgtgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttc
cgcgcagcggaggagctcggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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