Shigella dysenteriae 1617 (serotype 1): Asd1617_04938
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Entry
Asd1617_04938 CDS
T02933
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sdz
Shigella dysenteriae 1617 (serotype 1)
Pathway
sdz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Asd1617_04938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdz03021
]
Asd1617_04938
03400 DNA repair and recombination proteins [BR:
sdz03400
]
Asd1617_04938
Enzymes [BR:
sdz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Asd1617_04938
Transcription machinery [BR:
sdz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Asd1617_04938
DNA repair and recombination proteins [BR:
sdz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Asd1617_04938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
AHA67765
UniProt:
A0A0A7A0S6
LinkDB
All DBs
Position
complement(3422936..3426997)
Genome browser
AA seq
1353 aa
AA seq
DB search
MGRLVSELRNPMVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGL
EAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA
PEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGK
VLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVI
FEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV
EYIAGKVVAKDYIDESTGELICAANMELSLELLAKLSQSGHKRIETLFTNDLDHGPYISE
TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL
LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV
RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR
ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET
PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ
VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA
VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP
CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT
TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP
KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE
EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN
QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR
HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
AMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDG
AKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG
SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV
DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgacttgtcagcgagctgaggaaccctatggtttactcctataccgagaaaaaa
cgtattcgtaaggattttggtaaacgtccacaagttctggatgtaccttatctcctttct
atccagcttgactcgtttcagaaatttatcgagcaagatcctgaagggcagtatggtctg
gaagctgctttccgttccgtattcccgattcagagctacagcggtaattccgagctgcaa
tacgtcagctaccgccttggcgaaccggtgtttgacgtccaggaatgtcaaatccgtggc
gtgacctattccgcaccgctgcgcgttaaactgcgtctggtgatctatgagcgcgaagcg
ccggaaggcaccgtaaaagacattaaagaacaagaagtctacatgggcgaaattccgctc
atgacagacaacggtacctttgttatcaacggtactgagcgtgttatcgtttcccagctg
caccgtagtccgggcgtcttctttgactccgacaaaggtaaaacccactcttcgggtaaa
gtgctgtataacgcgcgcatcatcccttaccgtggttcctggctggacttcgaattcgat
ccgaaggacaacctgttcgtacgtatcgaccgtcgccgtaaactgcctgcgaccatcatt
ctgcgcgccctgaactacaccacagagcagatcctcgacctgttctttgaaaaagttatc
tttgaaatccgtgataacaagctgcagatggaactggtgccggaacgcctgcgtggtgaa
accgcatcttttgacatcgaagctaacggtaaagtgtacgtagaaaaaggccgccgtatc
actgcgcgccacattcgccagctggaaaaagacgacgtcaaactgatcgaagtcccggtt
gagtacatcgcaggtaaagtggttgctaaagactatattgatgagtctaccggcgagctg
atctgcgcagcgaacatggagctgagtctggagctgctggctaagctgagccaatctggt
cacaagcgtatcgaaacgctgttcaccaacgatctggatcacggcccatatatctctgaa
accttacgtgtcgacccaactaacgaccgtctgagcgcactggtagaaatctaccgcatg
atgcgccctggcgagccgccgactcgtgaagcagcggaaagcctgtttgagaacctgttc
ttctccgaagaccgctatgacctgtctgcggttggtcgtatgaagttcaaccgttctctg
ctgcgcgaagaaatcgaaggttccggtatcctgagcaaagacgacatcattgatgttatg
aaaaagctcatcgatatccgtaacggtaaaggcgaagtcgatgatatcgaccacctcggc
aaccgtcgtatccgttccgttggcgaaatggcggaaaaccagttccgcgttggcctggta
cgtgtagagcgtgcggtgaaagagcgtctgtctctgggcgatctggataccctgatgcct
caggatatgatcaacgccaagccgatttccgcagcagtgaaagagttcttcggttccagc
cagctgtctcagtttatggaccagaacaacccgctgtctgagattacgcacaaacgtcgt
atctccgcactcggcccaggcggtctgacccgtgaacgtgcaggcttcgaagttcgagac
gtacacccgactcactacggtcgcgtatgtccaatcgaaacccctgaaggtccgaacatc
ggtctgatcaactctctgtccgtgtacgcacagactaacgaatacggcttccttgagact
ccgtatcgtaaagtgaccgacggtgttgtaactgacgaaattcactacctgtctgctatc
gaagaaggcaactacgttatcgcccaggcgaactccaacctggatgaagaaggccacttc
gtagaagacctggtaacttgccgtagcaaaggcgaatccagcttgttcagccgcgaccag
gttgactacatggacgtatctacccagcaggtggtatccgtcggtgcgtccctgatcccg
ttcctggaacacgatgacgccaaccgtgcattgatgggtgcgaacatgcaacgtcaggcc
gttccgactctgcgcgctgataagccgctggttggtactggtatggaacgtgctgttgcc
gttgactccggtgtaactgcggtagctaaacgtggtggtgtcgttcagtacgtggatgct
tcccgtatcgttatcaaagttaacgaagacgagatgtatccgggtgaagcaggtatcgac
atctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccagatgccg
tgtgtgtctctgggtgaaccggttgaacgtggcgacgtgctggcagacggtccgtccacc
gacctcggtgaactggcgcttggtcagaacatgcgcgtagcgttcatgccgtggaatggt
tacaacttcgaagactccatcctcgtatccgagcgtgttgttcaggaagaccgtttcacc
accatccacattcaggaactggcgtgtgtgtcccgtgacaccaagctggggccggaagag
atcaccgctgacatcccgaacgtgggtgaagctgcgctctccaaactggatgaatccggt
atcgtttacattggtgcggaagtgaccggtggcgacattctggttggtaaggtaacgccg
aaaggtgaaactcagctgaccccagaagaaaaactgctgcgtgcgatcttcggtgagaaa
gcctctgacgttaaagactcttctctgcgcgtaccaaacggtgtatccggtacggttatc
gacgttcaggtctttactcgcgatggcgtagaaaaagacaaacgtgcgctggaaatcgaa
gaaatgcagctcaaacaggcgaagaaagacctgtctgaagaactgcagatcctcgaagcg
ggtctgttcagccgtatccgtgctgtgctggtagccggtggcgttgaagctgagaagctc
gacaaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaat
cagctggaacagctggctgagcagtatgacgaactgaaacacgagttcgagaagaaactc
gaagcgaaacgccgcaaaatcacccagggcgacgatctggcaccgggcgtgctgaagatt
gttaaggtatatctggcggttaaacgccgtatccagcctggtgacaagatggcaggtcgt
cacggtaacaagggtgtaatttctaagatcaacccgatcgaagatatgccttacgatgaa
aacggtacgccggtagacatcgtactgaacccgctgggcgtaccgtctcgtatgaacatc
ggtcagatcctcgaaacccacctgggtatggctgcgaaaggtatcggcgacaagatcaac
gccatgctgaaacagcagcaagaagtcgcgaaactgcgcgaattcatccagcgtgcgtac
gatctgggcgctgacgttcgtcagaaagttgacctgagtaccttcagcgatgaagaagtt
atgcgtctggctgaaaacctgcgcaaaggtatgccaatcgcaacgccggtgttcgacggt
gcgaaagaagcagaaattaaagagctgctgaaacttggcgacctgccgacttccggtcag
atccgcctgtacgatggtcgcactggtgaacagttcgagcgtccggtaaccgttggttac
atgtacatgctgaaactgaaccacctggtcgacgacaagatgcacgcgcgttccaccggt
tcttacagcctggttactcagcagccgctgggtggtaaggcacagttcggtggtcagcgt
ttcggggagatggaagtgtgggcgctggaagcatacggcgcagcatacaccttgcaggaa
atgctcaccgttaagtctgatgacgtgaacggtcgtactaagatgtataaaaacatcgtg
gacggcaaccatcagatggagccgggcatgccagaatccttcaacgtattgttgaaagag
attcgttcgctgggtatcaacatcgaactggaagacgagtaa
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