Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_3913
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Entry
STM474_3913 CDS
T01760
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase adenylation domain protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
seb
Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb03030
DNA replication
seb03410
Base excision repair
seb03420
Nucleotide excision repair
seb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
seb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STM474_3913 (ligA)
03410 Base excision repair
STM474_3913 (ligA)
03420 Nucleotide excision repair
STM474_3913 (ligA)
03430 Mismatch repair
STM474_3913 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seb03032
]
STM474_3913 (ligA)
03400 DNA repair and recombination proteins [BR:
seb03400
]
STM474_3913 (ligA)
Enzymes [BR:
seb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STM474_3913 (ligA)
DNA replication proteins [BR:
seb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STM474_3913 (ligA)
DNA repair and recombination proteins [BR:
seb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STM474_3913 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STM474_3913 (ligA)
MMR (mismatch excision repair)
DNA ligase
STM474_3913 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STM474_3913 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADX19530
UniProt:
E8XGT9
LinkDB
All DBs
Position
complement(3952471..3954156)
Genome browser
AA seq
561 aa
AA seq
DB search
MRLWKSMAWGILLWHSQSGALCPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSV
YDQLSARLVQWQRCVGQDVSSTPVSPPLNGTTMHPVAHTGVRKLADRQAVEQWMRGRSEL
WVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAVLQG
EIFLQREGHIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQL
AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPASQHWRPGQGDW
LAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKRWEAWDI
APGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFYASATCQEQFISRLIW
LGSRSALGLDGMGEASWRALHQTHRFEHIFSWLTLTSAQIANTPGFAKGKSEQIWRQFNL
ARRQPFTRWIMAMDIPLTQAALQASGDRSWEQLLMRTEQHWRQLPATGERRAGRVIDWRN
NLQIKALSRWLAAQHIPGFGS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagattatggaaaagtatggcgtggggaattttattgtggcattcgcagagtggggcg
ctttgcccggcctggccgccagcaagggccgctgaagaaatcgcccgtttacagcaacag
ctcgctgactggaatgacatctactggaaacaaggggttagcgcggttgacgatagtgtg
tacgaccaactcagcgcaaggctggttcagtggcaacgctgtgttggtcaggatgtttca
tctactccggtttcaccgccgttaaacggtacaacaatgcaccctgttgcgcacacgggc
gtacgtaaactcgcggaccgacaggcggtagaacagtggatgcgcgggcgcagcgagctt
tgggtacagccaaaagtggatggcgtagcggtaacactggtttatcaaaacggtaaactg
accagggccattagccggggtaacggactacaaggcgaggactggacgccaaaaattcgc
ctgatcccctctataccgcagacaacacaaggcgcgcttgctaacgcggtgttacagggc
gaaatctttctacagcgcgagggacatatccagcaacggatgggcgggatgaatgcgcgc
tcgaaagtcgcaggaatgttaatgcgccaggataacgcctccgcgctaaattcgttgggt
atttttatttgggcgtggccggacggtccggcaaatatgcccgaaagattaagccaactt
gctaaggctggattcagtctgacgaataaatataccctggcggtaaaagatgccagcgag
gtcgagcgggcgcgccagtcatggctgacgtcagcattaccctttgtaacggatggcgta
gtgatacgcatggctaaagaacctgcgtcacaacactggcgacccgggcagggcgactgg
ctggcagcatggaaatatccgccagtagcgcaggtcgcgcaagtgagcgctattcagttc
tcggtggggaaaagcggcaaaattaccgtagtagcgtcgcttgtccccgttatattggat
gataagcgggttcagcgggtcaatatcggttctgtgaaacgttgggaagcgtgggatatc
gcgccgggcgatcagatcctggtgagtctggccgggcaaggcattccccggcttgatgag
gtcgtctggcggagtcgtgagcggagtaagcctgtaccgcctgatagccatttcaactcg
ctgacctgcttttacgcgtcggcaacgtgtcaggaacagtttatctccaggctgatatgg
ctggggtcacggtcggcgttgggtctggacggaatgggtgaagccagctggcgggccttg
catcagacgcatcgctttgagcatatcttctcctggcttaccctgacgtcagcgcaaata
gccaacacgccaggctttgctaaaggaaaaagcgagcagatatggcggcaatttaacctg
gcgcgccggcagccgtttacccgctggatcatggcgatggatatccccttaacgcaggct
gcattacaggccagcggcgatcgttcatgggagcagttattaatgcgaacagagcaacac
tggcggcagttaccagcgacgggcgagcgtcgtgccgggagagtcatcgactggcggaat
aatctgcagatcaaagcgctgagcagatggctggctgctcagcatattcccggatttggg
tcttag
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