Secondary endosymbiont of Ctenarytaina eucalypti: A359_02800
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Entry
A359_02800 CDS
T02199
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sect
Secondary endosymbiont of Ctenarytaina eucalypti
Pathway
sect03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sect00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A359_02800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sect03021
]
A359_02800
03400 DNA repair and recombination proteins [BR:
sect03400
]
A359_02800
Enzymes [BR:
sect01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A359_02800
Transcription machinery [BR:
sect03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A359_02800
DNA repair and recombination proteins [BR:
sect03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A359_02800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AFP84677
UniProt:
J3TF45
LinkDB
All DBs
Position
436519..440742
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKNEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVESGMTNLERLQILTEEQYLDALEEFGDEFDAKM
GAEAIQVLLQQMDLENECEKLREELAATNSETKRKKLTKRIKLLEAFLHSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGAC
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRVNGKGEGMVLTGPKEAERIYRAG
VAELHARVKVRITEHEQLANGEWAENTSLVDTTVGRAILWMIVPKGLPFLLVNQSLGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPEKKAEVIDEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSIEAVMNRNGEEERQASFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCLTFSGIVMAPVIEGGDVKEPLRDRVL
GRVTAEAILKPGSEDILVERNTLLNEQWCDVLEKNSVDSIKVRSVVTCDTDFGVCANCYG
RDLARGHRVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKSKGTIRL
SNAKFVVNCSGKLVITSRNTEMKLIDEFGRTKESYKVPYGAVMAKGDGAEIMGGETVANW
DPHTMPVITEVDGFVRFTDMIDGQSITRQTDELTGLSSIVVLDTAERTGGGKDLRPAQRI
VDANGNDVLLPGSDMPAQYFLPGKTIVQLEDGAKITGGDTLARLPQETSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKDTKGKRRLVLSPVDGSDAYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIVSSGNSEFLEGEQAEYSRIKIANRQLENNDQVAITYMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHKKRARNHQKNEAPI
APQITADEASANLAELLNAGMSSRVED
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaaatttctgaaagcgcaaactaaaaacgaagagtttgatgcgatc
aaaattgcgctggcctcgccagacatgatccgttcctggtctttcggtgaagtaaaaaag
ccggaaaccattaactaccgaacctttaaacccgagcgcgacggcctcttctgcgcgcgt
attttcggaccggtaaaagactacgaatgcctgtgcggtaagtataagcgattgaaacac
cgcggcgtcatttgtgagaagtgcggggttgaagtaacccagaccaaggtgcgtcgtgag
cgtatggggcatatcgagttagcatcgcccaccgcccacatctggtttttgaaatcgcta
ccatcccgcattggattgctgctggatatgccgctacgcgatatcgaacgcgtgctatat
tttgagtcctatgtcgtcgttgaaagtggcatgaccaaccttgagcgccttcagattctg
actgaagagcagtatctagacgctcttgaagagttcggtgatgaatttgatgctaaaatg
ggcgcagaggcgatccaggtcttgttacaacagatggatcttgaaaacgaatgcgagaaa
ctgcgtgaagagttagcagcaactaattccgaaaccaagcgaaaaaagctgactaagcgc
atcaagctactagaagcctttctgcacagtggcaataagccagagtggatgattctaacc
gtgcttccagtactcccgccggatctgcgaccactggtgccgctggacggcggccgcttc
gcaacgtcggatctgaacgatctatatcgaagagtgatcaaccgcaataaccgattgaag
cgcctcctagatctagcggcgccggatatcatagtgcgaaacgaaaaacgcatgctgcaa
gaatccgttgatgcccttctcgataacggccgccgcggtcgagccattactggctctaac
aaacgtcctcttaaatcgctagcggatatgattaaaggtaagcaaggtcgtttccgacag
aatttgcttggcaagcgagtcgattactctggacgttcagttattaccgtcggtgcatgc
ctgcgccttcatcagtgcggcctccccaagaaaatggcgctggagctgttcaagccattt
atttacggcaagctagaactgcggggtctcgcaacaacaatcaaagccgccaagaaaatg
gttgaacgcgaagaagctgtagtctgggatattctagatgaggttatccgagaacaccca
gtaatgttaaaccgcgcgccgacactgcaccgtctgggcatccaagcgtttgagccggta
ctaattgaaggtaaggctattcaactgcaccctctagtgtgtgcagcatataacgctgac
ttcgacggcgaccagatggcggtacatgttccactaacactagaggctcagctagaagcg
cgcacgctgatgatgtccaccaacaacatcctgtctcccgccaatggcgagcccatcatc
gtaccgtcacaggacgtagtgctaggtctttactatatgacccgagatcgggtcaacggc
aaaggcgaaggtatggtactgaccggtccgaaagaagccgagcgtatctaccgcgctggc
gtagccgagctacatgcgcgtgttaaagttcgtattacggagcatgaacaacttgccaac
ggcgagtgggcggagaataccagtttagtagataccacggttggccgtgccatcctatgg
atgatcgtgccaaagggattgccgttcttactggtgaatcagtcactaggtaaaaaagcc
atctctaagatgcttaatacctgttatcgggtgctaggtctaaaaccgaccgtaattttt
gccgaccagatcatgtacaccggtttcgcctacgccgcccgttccggatcctcggtcggg
atcgacgatatggtgataccagagaagaaagccgaagtgattgatgaagccgaagccgaa
gtcgctgaaatacaagagcaatttcagtcgggtctagtgactgccggcgaacgctataat
aaggttattgatatctgggctgcggctaacgagcgtgtcgctaaggccatgatggataat
ctatctatcgaagcggtaatgaaccgcaatggcgaagaagaacgtcaggcatcgtttaac
agcatctttatgatggctgactctggcgcccgtggttcggcagcgcaaattcgccaacta
gccggtatgcgtggtttgatggcaaaaccagacggttccatcatcgagacgcctattact
gcaaattttcgtgagggtttaaacgtactccagtattttatttctacgcacggagcgcgt
aaaggtttggcggacaccgcactgaaaacagctaactccggttacctaacccgtcgcttg
gtcgacgtagcgcaggatctggtggttactgaagatgactgcctaactttttccggcatt
gtgatggccccggttatcgaaggcggagacgtgaaagagcctctgcgcgaccgcgtgctc
ggccgcgtcactgcggaagctatcctgaaaccaggcagcgaagatattctcgttgagcgc
aataccctattgaatgagcagtggtgtgacgttctagaaaaaaactccgtagatagcatc
aaggtgcgttcggtcgtgacctgcgacactgatttcggtgtgtgcgctaactgctatggc
cgcgatttagcgcgtggtcatagggtaaataaaggagaagccatcggcgttatcgctgca
cagtcgataggcgaacccggaactcaattgactatgcgtacattccatatcggaggagcg
gcatcccgtgctgcggctgaatccagcattcaggtcaagagcaaaggaaccattcgtctc
agcaatgccaagtttgtagtgaactgtagtggaaagctggtaatcacttcacgcaatact
gaaatgaagttgattgatgaatttggccgtaccaaagaaagctataaagtgccttatggc
gcagtcatggccaaaggtgatggtgcagaaatcatggggggcgaaactgttgctaattgg
gatccgcatactatgccggttatcactgaagtcgacggtttcgtacgcttcactgacatg
atcgacgggcagagtattacacgccagacagatgaattaaccggcttgtcctctattgta
gtattagatactgctgagcgtacaggaggcggtaaagatctacgtccagctcagcggatt
gttgatgctaatggtaatgatgtactgcttccgggaagcgatatgcccgcacagtacttc
ctgccaggaaaaacgatcgtacagctggaagacggcgctaaaattaccggaggcgataca
cttgcccgtttaccgcaggaaacgagcggaaccaaggatattaccggtggcctaccgcgc
gttgcggatctgtttgaagcccgccgaccgaaagagccagctattctggccgagatcagc
ggcattgtttccttcggtaaagacactaaagggaagcggcggctggttctctcgccggta
gatggcagcgacgcttatgaagaaatgatcccgaaatggcgtcagctcaacgtatttgaa
ggtgagcgcgtagagcgcggcgatgtaatttctgacggaccggaatcgccgcacgacatt
cttcggctacgcggcgtgcatgcagtaacccgctatatagtcaatgaggttcaggaggtc
tatcgtctacaaggcgttaagatcaacgataagcatatcgaagttatcgtgcgtcagatg
ttgcgtaaagcaacgatcgttagcagcggtaactcagagtttttggaaggtgaacaagcg
gaatactcacgcatcaaaatagctaatcgtcagttagaaaataacgatcaggtagcaata
acctatatgcgcgatctgctcggcatcacaaaagcctcactagctacagagtcgtttatc
tcagcagcatcatttcaagaaactacgcgcgtgctaacagaagcagctgtagccgggaaa
cgcgatgagcttcgtggcctgaaggaaaacgtcattgtaggacggttaattccggccggt
accggttacgcgtaccataaaaaacgcgcccgaaatcatcagaaaaacgaagcgcctatc
gcacctcagattaccgccgatgaagcgtctgccaacctagctgaactgctgaacgcaggg
atgagcagtagggtagaagactga
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integrated database retrieval system