Sediminibacterium sp. TEGAF015: TEGAF0_07660
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Entry
TEGAF0_07660 CDS
T08564
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TEGAF0_07660 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sedt03021
]
TEGAF0_07660 (rpoA)
03400 DNA repair and recombination proteins [BR:
sedt03400
]
TEGAF0_07660 (rpoA)
Enzymes [BR:
sedt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TEGAF0_07660 (rpoA)
Transcription machinery [BR:
sedt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TEGAF0_07660 (rpoA)
DNA repair and recombination proteins [BR:
sedt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TEGAF0_07660 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_XRCC3_RpoA
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
BDQ11549
LinkDB
All DBs
Position
complement(875032..876033)
Genome browser
AA seq
333 aa
AA seq
DB search
MAILSFQKPDKIVLQKATDFEGQFEFRPLEPGYGLTIGNALRRVLLSSLEGYAIVGIKID
GVDHEFATIKGITEDVTEMILNLKQVRFKKNADMDLTSEKINLSIKGRSEFTAGMIGEVT
PSFQVMNPELLICTMDPTAKLDIELTIARGRGYVPAEENKVKDAPFGYIAIDSIHTPIKN
VKYAIENYRVEQRTDYEKLILDVATDGTIHPEEAVKQASRILIQHLMIITDENITFDNKE
DKKEDVVDEHVLQLRKVLKTPLEDLDLSVRAFNCLKAAKINSLSELVQYEQEDLMKFRNF
GQKSLSEIEQVLTERGLSFGMDLGKLGLDNLDN
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggcaatattaagcttccaaaagccagacaaaatcgttctacagaaagcaactgatttt
gaaggtcagtttgaatttcgtccgctagagccaggatatggattaaccattggtaatgct
ttacgcagagtacttttgagttctttagaaggatacgcaatcgtaggtattaaaattgac
ggagtagaccacgagtttgctactatcaaaggaattaccgaagacgttactgaaatgatc
ctgaatttaaagcaggttcgttttaagaagaacgccgatatggatttgacttctgaaaaa
atcaatttatcaatcaagggccgcagcgaattcactgccggaatgattggagaagttact
ccaagtttccaggtaatgaatcctgaattgttaatctgcaccatggatcctaccgctaaa
ttagacatcgagcttactattgcaagaggtcgcggttatgttcctgcagaagagaacaaa
gtgaaagatgctccatttggatatatcgcaatcgattctattcacaccccaatcaagaac
gttaaatacgctattgagaactaccgtgttgaacaaagaaccgattacgaaaaattaatt
ttggatgttgcaactgacggaactattcatcctgaagaagcagtaaaacaagcttccaga
attttgattcagcatttgatgatcatcaccgatgaaaacatcactttcgataacaaagaa
gataagaaagaagatgtagttgatgagcacgtattgcaactgcgcaaagtattgaaaact
ccattggaagatttagacctttctgtgcgtgctttcaactgcttaaaagcagcaaaaatt
aacagcttaagtgaactagttcaatatgaacaagaagatttgatgaagttcagaaacttc
ggtcagaaatcattgtctgaaattgagcaagtattaaccgaaagaggtttaagctttggt
atggatctaggtaaactaggtttagacaatttagataactaa
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