Sedimentibacter sp. zth1: JYG23_03400
Help
Entry
JYG23_03400 CDS
T07110
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYG23_03400 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedz03019
]
JYG23_03400 (rny)
Messenger RNA biogenesis [BR:
sedz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JYG23_03400 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
KH_KhpA-B
HDOD
OmpH
KH_NusA_2nd
KH_2
Motif
Other DBs
NCBI-ProteinID:
QSX06517
LinkDB
All DBs
Position
complement(705541..707079)
Genome browser
AA seq
512 aa
AA seq
DB search
MPYIEILVGIIGIGAGIYIGILVRKNIAEKKIGSAELEAKRIMENSVKEAETKKKEILLE
ARDESHKLRNELERETKERRAELQRTEKRLFKKEEILDSKSLSIERKEDSLQRKIKDLEL
KQARLAALHDRQNEELQRISGLTSEEAKAMLIENIKRQAEKEAALMVKEIERDAKENADR
KAREIITYAVQKCSADHVAETTVSVVDLPNDEMKGRIIGREGRNIRALETLTGIDLIIDD
TPEAVVISGFDPMRREVARIALEKLISDGRIHPARIEEMVEKAKKEIDQKIKEDGEQAAF
DTGIHGLRPELIKLLGRLRFRTSYGQNVLKHSIEVAHLAGIMAAELGADIKLAKRAGLLH
DIGKAIDHEVEGPHVVIGEDLARKYKENKAICNAIGAHHGDVEPQTVEAVLVQAADAISA
ARPGARRETLETYIKRLEKLEEISNSFDGVEKSFAIQAGREIRIMVKPEVVNDNSIILVA
KDIVKRIEDELEYPGQIKVNVIRETRATEYAK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgccatacattgaaatactagtaggcattatcggtattggtgcgggtatttacataggt
atacttgtacgtaaaaatatagctgagaaaaaaataggtagtgctgaattagaagcgaaa
aggataatggaaaattccgtaaaagaagcggagacaaagaaaaaagaaatattattagaa
gcaagagacgagtcacacaagctaagaaatgaacttgaaagagaaacaaaagaaagaaga
gctgaacttcagagaactgagaaaagattatttaaaaaagaagaaatacttgattcaaaa
agtttaagtatagagagaaaagaagacagcttacaaagaaaaattaaagatttagaatta
aaacaagccagattggcagctttacatgataggcaaaacgaagaactacaaagaatttct
ggtttgacatcagaagaagcgaaggctatgttaattgaaaacattaaaagacaagcagaa
aaagaagctgcattaatggtaaaagaaattgaaagagacgcaaaagaaaacgctgataga
aaagcaagagaaattattacttatgcggtacaaaaatgctcagctgaccatgtagcagaa
acaactgtttctgtagttgatttacctaacgatgaaatgaaaggcagaatcataggtaga
gaaggaagaaatattcgagcattagaaacgcttactggaattgatttaattattgatgat
actccagaagctgtagttatatctggatttgatcctatgagacgtgaagttgcaagaatt
gcattagaaaaattaatttcagatggaagaatacatccagcaagaattgaagaaatggtt
gagaaagctaaaaaagaaatcgatcaaaaaattaaagaagacggtgaacaagcggcattt
gatactggcatacacggattacgtcctgaacttataaaattattaggtagactaagattt
agaacaagctatggtcaaaatgttttaaaacattctatagaagttgctcatttagctgga
ataatggcagctgaattaggcgcggatataaaattggctaaaagagctggtttgttacat
gatataggtaaagcaatagatcatgaagtagaaggccctcatgtagttattggagaggat
ttagctaggaagtacaaagagaacaaagcaatttgtaacgcaataggtgctcatcatggt
gatgttgagccacaaacagtagaagctgtattggtacaggcagcagatgcaatttcagca
gcaagacctggtgcaagaagagaaacacttgaaacatatattaagagattagaaaaatta
gaagaaatatcaaactcatttgatggtgttgaaaaatcttttgctatccaagcgggtaga
gaaataagaataatggtaaaacctgaagtagtaaatgataattcaataatactagttgct
aaagatattgttaagagaatagaagatgaattagaatatcctggtcaaattaaagttaat
gttataagagaaactagagctactgagtacgcaaaataa
DBGET
integrated database retrieval system
