Salmonella enterica subsp. enterica serovar Cubana: CFSAN002050_23045
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Entry
CFSAN002050_23045 CDS
T02734
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
seec
Salmonella enterica subsp. enterica serovar Cubana
Pathway
seec02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
seec00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFSAN002050_23045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
seec03021
]
CFSAN002050_23045
Transcription machinery [BR:
seec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFSAN002050_23045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMPIT
YicC_N
DcrB
Motif
Other DBs
NCBI-ProteinID:
AGQ74480
LinkDB
All DBs
Position
4438466..4440448
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AA seq
660 aa
AA seq
DB search
MPHIDREAPDSRSERQRPKYKYALALNVDSYTVDTNQTNKCGYRLMEQNPQSQLKLLVTR
GKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLLLAENTTSTD
EDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCS
VAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEEMAPTATHVGSELSQEDLDDD
EDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLS
EVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSE
TWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGEAKAR
RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK
IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA
REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgccgcatatcgatcgggaagcccccgacagccgcagtgagaggcagcggccaaaatat
aagtatgccctcgctttaaatgtcgacagctataccgtcgacaccaatcaaacgaataag
tgtggataccgtcttatggagcaaaacccgcagtcacagctgaaacttcttgtcacccgt
ggtaaggagcaaggctatctgacctatgctgaggtcaatgaccatctgccggaagatatc
gtcgattcagatcaaattgaagatatcatccaaatgatcaacgacatgggtattcaggta
atggaagaagcgcctgatgccgatgatctgctgctggctgaaaataccaccagcaccgat
gaagatgcggaagaagctgctgcacaagttctgtccagtgttgagtctgaaatcggtcgt
acgactgacccggtacgcatgtatatgcgtgaaatgggcactgttgaactgttgacccgg
gaaggcgaaatcgacatcgctaaacgtatcgaagacgggatcaaccaggttcaatgctcc
gttgccgaatacccggaagccattacctatctgctggaacagtacgatcgcgttgaggct
gaagaggctcgtttgtccgatcttatcaccggctttgtcgatccgaacgcggaagaagag
atggcgccgaccgcaactcacgtcggttctgaactctcccaggaagacctggatgatgac
gaagacgaagatgaagaagacggcgacgatgacgccgccgatgacgacaatagcattgac
cctgaactggcacgcgaaaaattcgctgagctgcgcgcgcaatacgtcgttacgcgcgac
accatcaaagcgaaaggccgcagccatgctgccgcgcaggaagagattctgaagctgtct
gaagtgttcaaacagttccgtctggtaccgaagcaattcgactatctggtcaacagtatg
cgcgtgatgatggatcgcgtgcgtacccaggaacgtctgatcatgaagctctgcgtcgag
cagtgcaaaatgccgaagaagaactttatcacgctgtttaccggtaacgaaaccagcgaa
acctggttcaacgccgctatcgcgatgaacaaaccgtggtcggaaaaactgcacgatgtc
gcggaagaagtgcaacgctgcctgcaaaaactgcggcagattgaagaagaaaccggtctg
accatcgaacaggtgaaagacatcaaccgtcgcatgtctatcggggaagcgaaagcccgc
cgtgcgaagaaagagatggttgaagcgaacttgcgtctggttatttctatcgccaagaaa
tacaccaaccgtggcttgcagttccttgacctgattcaggaaggcaacatcggtctgatg
aaagcggtagataaatttgaataccgtcgtggttacaagttctccacctacgctacctgg
tggattcgtcaggcgatcacccgctctatcgcggatcaggcgcgcaccatccgtattccg
gtgcatatgattgagaccatcaacaagctcaaccgtatttctcgccagatgctgcaagag
atgggccgcgagccaacgccggaagagctggctgaacggatgctgatgccggaagataaa
attcgtaaggtgctgaagattgccaaagagccaatctccatggaaacgccgatcggcgac
gatgaagattcgcatctgggtgatttcatcgaggataccaccctcgagctgccgctggac
tctgccactaccgagagcctgcgtgccgccactcacgacgttttggctggcctgaccgct
cgtgaagcgaaagtgctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctg
gaagaagtgggtaaacagttcgatgttacccgcgaacgtatccgtcagatcgaagcgaag
gcgctgcgtaaactgcgccacccgagccgttctgaagtgctgcgcagcttcctcgacgat
taa
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