KEGG   Salmonella enterica subsp. enterica serovar Paratyphi C: SPC_2515
Entry
SPC_2515          CDS       T00862                                 
Symbol
ycfD
Name
(GenBank) hypothetical protein
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
sei  Salmonella enterica subsp. enterica serovar Paratyphi C
Brite
KEGG Orthology (KO) [BR:sei00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sei03009]
    SPC_2515 (ycfD)
Enzymes [BR:sei01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     SPC_2515 (ycfD)
Ribosome biogenesis [BR:sei03009]
 Prokaryotic type
  ribosomal protein modification factors
   SPC_2515 (ycfD)
SSDB
Motif
Pfam: JmjC_2 WHD_ROXA Cupin_1 Cupin_2 AraC_binding
Other DBs
NCBI-ProteinID: ACN46620
UniProt: C0Q762
LinkDB
Position
2557167..2558318
AA seq 383 aa
MSDTSLRILNMEYQLTLNWPDFLERHWQKRPVVLKRGFSNFIDPLSPDELAGLAMESEID
SRLVSHQDGKWQVSHGPFESYDHLGESNWSLLVQAVNHWHEPTAALMRPFRALPDWRIDD
LMISFSVPGGGVGPHLDQYDVFIIQGAGRRRWRVGEKLQMRQHCPHPDLLQVDPFEAIID
EELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNSRELISGFADYVLQRELGNTYYSD
PDMPSRKHPADILPQEMDKLRNMMLDLINQPAHFQQWLGEFLSQSRHELDIAPPEPPYQP
DEIYDALKQGEVLVRLGGLRVLRIGDEVYANGEKIDSPHRPALEALASHIALTAENFGDA
LEDPSFLAMLAALVNSGYWFFEG
NT seq 1152 nt   +upstreamnt  +downstreamnt
gtgtcagataccagcctgcggatacttaacatggaataccaattaactcttaactggccc
gactttcttgaacgccactggcaaaaacgcccggtggtcttaaaacgtgggtttagcaac
tttatcgatccgctctcgccggatgagctggcggggctggcgatggaaagcgaaatcgac
agccgtctcgttagccatcaggatggcaaatggcaggtcagccatggccctttcgaaagc
tacgatcatctgggtgagagcaactggtcgctgctggtacaggcggtaaaccactggcac
gaacccaccgccgccttgatgcgcccgttccgcgctctgccggactggcgtatcgacgat
ctgatgatctccttttccgttcccggcggcggcgttggcccgcatctggatcagtatgat
gtgtttattatccagggagccggtcgccgtcgctggcgcgtgggcgaaaagctgcaaatg
cgtcagcactgcccacatcccgacctgttacaagtcgatccgttcgaggccattattgat
gaagagctggagccgggcgacattctgtatattccgccaggattcccgcatgaaggctat
gcgctggaaaacgccatgaactattcggtcggttttcgcgcgcccaatagccgtgagctg
atcagcggttttgccgattacgtcctgcaacgggagttgggcaatacatactacagcgat
ccggatatgccgtcccgcaagcatccggcggatatcctgccgcaggagatggataaactg
cgtaatatgatgctcgatttgatcaatcaacccgcgcatttccaacagtggcttggcgag
tttctctctcagtcacgccacgaactggatattgcgccgccggagccgccgtatcagcct
gatgaaatttacgatgccttaaagcaaggcgaggtattagtacgtctcggcgggcttcgc
gtattgcgtatcggcgatgaggtctatgcgaatggcgaaaaaatagactctccgcatcgc
cccgctctggaggcgctcgccagtcatattgcactgaccgctgaaaacttcggcgatgcg
ctggaagacccgtccttcctcgcgatgctggcggcgctggtgaatagcgggtactggttc
ttcgaaggataa

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