Slackia exigua: M1L65_01310
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Entry
M1L65_01310 CDS
T11352
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
seig Slackia exigua
Pathway
seig03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
seig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M1L65_01310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
seig03021
]
M1L65_01310
03400 DNA repair and recombination proteins [BR:
seig03400
]
M1L65_01310
Enzymes [BR:
seig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M1L65_01310
Transcription machinery [BR:
seig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M1L65_01310
DNA repair and recombination proteins [BR:
seig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M1L65_01310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
XQM00751
LinkDB
All DBs
Position
296849..300343
Genome browser
AA seq
1164 aa
AA seq
DB search
MDVPNLISVQTDSFTWFMTEGITEAFNAVCPIESSSKDMFVEFGAHEFGDPKYTVDECKE
KDVSYQAPLFAEIRFVNRETGEIKEQQVFMGDFPLMTPRGTFIINGTERVVVSQLVRSPG
IYFSAERDKTSDKTIYGAKVIPSRGAWLEFETDKRDILSVRIDRKRKQPATLLLRALGIA
ETREEIIEVLGGSEMVLRTLDRDPATTKEEALIELYKRFRPGEPPTLDSASTLLDGLFFN
PQRYDLAKVGRYKANKKLGFDHDDELGASSTLTERDIISTMRYVVALHGGEEGFQVDDID
HFGNRRIRTVGELIQNQFRIGLSRMERVVRERMGMQESDEITPQSLVNIRPIVAAIKEFF
GSSQLSQFMDQSNPAAGITHKRRLSALGPGGLSRERAGFEVRDVHNSHYGRMCPIETPEG
PNIGLIGSLATYARVNPYGFIETPYRRVIDGKVTDEVDYLTADEEEKHTIAQANDFFDQE
TRVFGRTVDGAFVPSDRVLCRTRDSKGVFGEPSEVPVGQVDYMDVSPRQMTSVATSLIPF
LEHDDANRALMGSNMQRQAVPLLKTAAPYVGTGIEHRIAVDSGEVVTAQNPGAVDYVDGS
TVIIRNDEGEFDEYLVPKFQRSNQSGCVNHKPLVRKGDEVFAGDVLTDGPSCDMAELALG
KNLLVAYTTWEGYNYEDAIVISERVVAEDLLTSIHISEYEVDARDTKLGPEEITREIPNI
SEDMIADLDADGIIRVGAEVEPGDVLVGKVTPKGETELTAEERLLRAIFGEKAREVRDTS
LKVPHGAGGRVVGISRFSRESDDELAPGVNELVRVFIAQKRKVQQGDKLSGRHGNKGVVS
RVLPVEDMPYLADGTPVDVMLNPLGVPSRMNVGQLLECHLGWAAKWGWSDAEETSESVDG
PIYVATPVFDGATEQEIADVIQKANRNLINRNHEKFGDLARDEFVPQLDSFGKTTLFDGR
TGEPFREPITVGYPYILKLGHMVDDKIHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVW
ALYAYGASNVLQEILTIKSDDTAGRVKAYEAIVKGENIPPAEVPESFKVLLKEMKSLGLN
VEMIGSDDQAIDLDDMDSEERSADQAALKTIMKEAEKTEEEHGDALRDIAADLRTLMADD
SASSADASELIGSDESADDEGEDR
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgcccaatctgatctccgtccagacggacagcttcacgtggttcatgaccgaa
ggcatcacggaggcgttcaacgccgtctgcccgatcgagagctcctcgaaggacatgttc
gtcgaattcggcgcccatgagttcggcgacccgaagtacacggtcgacgaatgcaaggaa
aaggacgtttcctaccaggctcctctgttcgccgagatccgcttcgtcaatcgcgagacg
ggcgaaatcaaagagcagcaggtcttcatgggcgacttcccgctcatgaccccgcgcggg
accttcatcatcaacggcaccgagcgcgtcgtcgtctcgcagctcgtccgttcgcccggc
atttacttctccgccgagcgcgataagacgtccgacaagaccatctacggcgcgaaggtc
atcccctcccgcggcgcatggctcgaattcgagaccgataagcgcgacatcctctccgtt
cgcatcgatcgcaagcgcaagcagccggccacgctgctcctccgcgcgctgggcatcgcc
gaaacgcgcgaggagatcatcgaggttctcggcggttccgagatggtgctgcgcaccctc
gatcgcgatcccgccactactaaggaagaagctctgatcgagctctacaagcgcttccgc
ccgggcgagccgcccacgctggattccgcttccacgctgctcgatggcctgttcttcaat
cctcagcgctacgatctcgcgaaggtcggccgctacaaggccaacaagaagctcggcttc
gatcacgacgacgagctgggcgcttcctccacgcttaccgagcgcgacatcatctccacg
atgcgctacgtcgtcgctctgcacggcggcgaggaaggcttccaggtcgacgacatcgac
cacttcggcaaccgccgcatccgcacggtcggcgagctgatccagaaccagttccgtatc
ggcctgtcccgcatggagcgcgtcgtgcgcgagcgcatgggcatgcaggaatccgacgag
atcaccccgcagtccctggtgaacatccgcccgatcgtcgccgccatcaaggaattcttc
ggctcctcgcagctgtcgcagttcatggaccagtccaatcccgccgccggcatcacgcac
aagcgccgcctgtcggccctcggcccgggcggtctgtcccgcgagcgcgcaggcttcgaa
gtccgcgacgtccacaactcccactacggccgcatgtgcccgatcgaaacgcctgaaggc
ccgaacatcggcctgatcggctcgcttgcgacctatgcgcgcgtcaacccgtacggcttc
atcgagacgccgtatcgtcgcgtcatcgacggcaaggtcaccgacgaggtcgactacctg
accgcggacgaggaggagaagcacacgatcgcccaggcgaacgacttcttcgatcaggag
acccgtgtcttcggccgcaccgtggacggcgcgttcgtcccgtccgatcgcgtgctctgc
cgcacccgcgactccaagggcgtcttcggcgagccttccgaagtgcctgtcggccaggtc
gactacatggacgtctccccgcgtcagatgacgtcggtcgcgacgtcgctcatcccgttc
ctcgagcatgacgacgcgaaccgcgcgctcatgggatcgaacatgcagcgccaggccgtg
cctctgctcaagaccgctgccccgtacgtcggcacgggcatcgagcatcgcatcgccgtc
gattccggcgaggtcgtcaccgcccagaaccccggagccgtcgactatgtcgacggctcc
acggtcatcatccgcaacgatgagggcgaattcgacgaatacctggttcctaagttccag
cgttccaatcagtccggctgcgtgaaccacaagccgctcgtccgcaagggcgacgaggtc
ttcgcgggcgacgtgctgaccgacggcccgtcctgcgacatggccgagctcgcgttgggc
aagaacctgctggtcgcgtacaccacgtgggaaggctacaactacgaggacgccatcgtc
atcagcgagcgcgtcgtcgccgaggacctgctcacgtccatccatatctcggaatacgaa
gtcgacgcccgcgacaccaagcttgggcccgaggaaatcacccgcgagattccgaacatc
tccgaggacatgatcgccgatctcgacgccgacggcatcatccgcgtgggcgccgaggtc
gagccgggcgatgtcctggtcggcaaggtcaccccgaagggcgagaccgagctcaccgcc
gaggaacgcctgttgcgcgccatcttcggcgagaaggcccgcgaagtccgcgacacgtcg
ctcaaggtgccccacggcgccggcggccgcgtcgtcggcatcagccgcttcagccgtgaa
agcgacgacgagctcgctcccggtgtcaacgagctggtgcgcgtgttcatcgcccagaag
cgcaaggtccagcagggcgacaagctctccggccgtcatggcaacaagggcgtcgtgtcc
cgcgtcctgccggtcgaggacatgccgtatctcgccgacggcacgccggtcgacgtcatg
ctcaacccgctgggcgttccttcccgtatgaacgtcggtcagctgctcgagtgccatctc
ggctgggccgccaagtggggctggtccgatgctgaagagacctccgaatccgtcgacggc
ccgatctacgtcgccacgccggtcttcgacggcgcgacggagcaggagatcgccgacgtc
atccagaaggccaaccgcaatctcatcaaccggaaccacgagaagttcggcgacctggcg
cgcgacgagttcgtcccccagctcgattccttcggcaagacgacgcttttcgacggccgc
accggcgagccgttccgcgagcccatcaccgtcgggtatccgtacatcctgaagctcggc
cacatggtcgacgataagatccatgcgcgctcgaccggcccgtacagcctcattacccag
cagcctctgggcggcaaggcccagttcggcggccagcgcttcggcgagatggaggtctgg
gccctctacgcgtacggcgcgtccaacgtgctgcaggagatcctcacgatcaagtccgac
gacactgcgggccgcgtgaaggcgtacgaagccatcgtcaagggcgagaacatcccgccc
gcggaggtccccgagtccttcaaggtcctgctcaaggagatgaagtccctcggactgaac
gtcgagatgatcggatccgacgaccaggccatcgatcttgacgatatggactccgaagag
cgctccgccgaccaggccgcgctcaagacgattatgaaggaagccgagaagaccgaggag
gagcatggggacgcgctgcgcgatatcgccgccgacctgcgcactctgatggctgacgat
tctgcgtcgtccgccgatgcatccgagctcatcggctcggacgaatctgccgatgacgaa
ggagaggatcgataa
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