Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601: SSPA0411
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Entry
SSPA0411 CDS
T00756
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sek
Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
Pathway
sek03030
DNA replication
sek03410
Base excision repair
sek03420
Nucleotide excision repair
sek03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SSPA0411
03410 Base excision repair
SSPA0411
03420 Nucleotide excision repair
SSPA0411
03430 Mismatch repair
SSPA0411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sek03032
]
SSPA0411
03400 DNA repair and recombination proteins [BR:
sek03400
]
SSPA0411
Enzymes [BR:
sek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SSPA0411
DNA replication proteins [BR:
sek03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SSPA0411
DNA repair and recombination proteins [BR:
sek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SSPA0411
NER (nucleotide excision repair)
GGR (global genome repair) factors
SSPA0411
MMR (mismatch excision repair)
DNA ligase
SSPA0411
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SSPA0411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CAR58535
UniProt:
B5BB72
LinkDB
All DBs
Position
506644..508659
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQ
RVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQA
ATIDELQKVPDVGIVVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgaatat
ctgtatcatgtgatggatgcgccagagattcccgacgccgaatatgaccgcctgatgcgg
gaactgcgagagctggaggcgcaacgtccggaccttatcacgccggattcgcccacgcag
cgcgttggcgcggcgccgctgacggcattcaaccagattcgccatgaagtaccgatgctg
tcgctcgataacgtatttgatgaagaaagcttcctggcgtttaacaagcgagtgcaggat
cgtctaaaaagcacggaaaatgtcatctggtgctgcgagctaaagctggatggcctggcg
gtcagcattctgtatgaaaacggcgtgctggtgagcgcagcgacgcgtggcgacggcacc
accggtgaagatatcacttcaaacgtgcgcacgattcgcgccattccgttaaagctgcac
ggcgataacattccggcgcgtcttgaagttcgcggagaggtatttttaccgcaggccggg
tttgaaaagatcaatgaagacgcgcgccgcactggcggcaaagtgtttgctaacccgcgt
aacgcggcggcgggctcgctgcgtcagctcgatccgcgtattacggcgaagcgaccgcta
acatttttctgctacggcgtcggtattctggaaggcggcgagttgccggatacgcatctg
ggacgtttgctgcaatttaaagcgtgggggttaccggtcagcgatcgcgtgacgctgtgc
gattctccccaggcggtactggatttttatcacaacgtcgaaaaagatcgccccacgctc
ggttttgatatcgacggcgtggtgattaaggtcaactcgctggctttgcaggaacagctg
ggctttgtggcccgcgcgccgcgctgggcggtggcgtttaaattccctgctcaggagcag
atgacttttgtgcgcgatgttgagtttcaggttgggcgcactggggcgattacgccggtg
gcgcgtctggaaccggttcaggtggctggtgtgctggtcagcaatgccacgttgcataat
gccgatgaaattgagcggcttggcttgcgcattggcgataaggtggttatccgtcgggca
ggcgatgtgatccctcaggtggtcaacgtggttctgtccgaacgccctgaagagacgcgt
ccgattgtgtttccaacgcactgtccggtgtgcggatcggacgtagagcgcgtcgaaggc
gaagccgttacccgttgtaccggtgggctgatttgcggcgcgcagcgtaaagagtcgctg
aaacattttgtgtcgcgccgggcgatggatgtagacgggatgggcgataagatcatcgac
caactggtggaaagggagtatgtccatacgccagcggatctgttccgtctgacggcgggt
aaactgaccggcctggaccgaatggggccaaagtccgcgcaaaatgttgtaaacgcgctg
gaaaaagccaaagcgacgacctttgcgcgttttctctatgcgctgggcatccgtgaagtg
ggtgaagcgacggcggcggggttggcggcttatttcggcacgctggaggcactacaggcc
gccaccattgacgagttgcagaaagtacctgacgtggggattgtggtcgctacgcacgtc
tttaacttttttgccgaagagagcaatcgtgatgtgattgtgcagctactggcggaaggg
gttcactggcccgcgccggtagtcattaatgtgcaagagatcgatagcccgtttgccggt
aaaaccgtggtactaaccggtagcctgagccagatgtcccgcgatgacgctaaagcgcgt
ttagtggcgctgggcgcgaaagtggcaggcagcgtatcgaagaaaaccgatctggtgatt
gccggtgaagcggcgggttccaaactggccaaagcgcaggaactgggcatcaatgtcatt
gatgaagcggaaatgatccgcttactgggtgcctga
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integrated database retrieval system
