Seohaeicola sp. tig00000074: ACMUJL_14015
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Entry
ACMUJL_14015 CDS
T11112
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
seoh Seohaeicola sp. tig00000074
Pathway
seoh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
seoh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACMUJL_14015 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
seoh03021
]
ACMUJL_14015 (rpoB)
03400 DNA repair and recombination proteins [BR:
seoh03400
]
ACMUJL_14015 (rpoB)
Enzymes [BR:
seoh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACMUJL_14015 (rpoB)
Transcription machinery [BR:
seoh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACMUJL_14015 (rpoB)
DNA repair and recombination proteins [BR:
seoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACMUJL_14015 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
XOY39040
LinkDB
All DBs
Position
2804007..2808152
Genome browser
AA seq
1381 aa
AA seq
DB search
MAQTFLGQKRLRRYYGKIREVLEMPNLIEVQKSSYDLFLNSGSGMQPADGEGIMGVFQSV
FPIKDFNESSVLEFVKYELEKPKYDVDECMQRDMTYAAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGMDQEAIMDAYYDTVQYKLSK
TKGAAQGWVTKFFPDRVRGTRPTFDLVDAATGEVIAEAGKKITPRAVKQLKDDGKVTQLL
VPFENILGKFVAKDIINEETGAIYVEAGDELTLTRDKDGEITGGSLKELMDAGISDIPVL
DIDNINVGPYIRNTMVADKNIGREGALMDIYRVMRPGEPPTVEAASALFDTLFFDADRYD
LSAVGRVKMNMRLDLDAADTMRTLRREDIVACIKALCELRDGKGDIDDIDHLGNRRVRSV
GELMENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMD
QTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGQNIGLINSLA
TYARVNKYGFIETPYRLVKEGQVTDEVVYLSATEEMRHTVAQANATLDADGNLVNELVTT
RQSGDYTLAPREQVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQALPLVQTE
APLVGTGIEGIVARDSGAAIMARRAGVIDQVDAMRIVVRATEDLELGDAGVDIYRMRKFQ
RSNQNTCINQRPLVKVGDVVAKGEVIADGPCTDMGELAVGRNVIVAFMPWNGYNYEDSIL
ISERIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADV
EPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRH
GVEKDERALQIEREEVERLARDRDDELAILDRNIYARLKDMILGKVAVKGPKGVKPNSII
DEELLSTLSRGQWWQLALENEADAQIMEALNAQYEVQKRTLDARFEDKVEKVRRGDDLPP
GVMKMVKVFIAVKRKLQPGDKMAGRHGNKGVVSKVIPMEDMPFLADGTPVDICLNPLGVP
SRMNVGQILETHMGWASRTLGLRVDEALQEYRRSGDLTPVRDAMRQAYGDDVYDEGIEGM
DEDQLIEAAGTITKGVPIATPVFDGAKEADVNDALKRAGFDTSGQSILFDGRTGEQFIRP
VTVGIKYLLKLHHLVDEKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAA
YTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAED
E
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccttcctcggccagaaacgtttgcgcagatattacggcaagatccgcgaa
gtgctggaaatgccgaacctgatcgaggtgcagaaatcctcgtatgacctgttcctgaac
tctggcagcggcatgcagcccgctgacggcgaaggaatcatgggcgtgttccagtcggtc
ttcccgatcaaggatttcaacgaatccagcgtgctggaattcgtgaaatacgagctggaa
aagccgaaatacgacgtcgatgaatgcatgcagcgcgacatgacctatgctgcgccgctc
aaggtcacactgcgtctgatcgtgttcgatgtcgacgaggatactggcgcgaagtcggtc
aaggacatcaaggaacaggacgtgttcatgggcgacatgcccctgatgacgcccaacggc
accttcgtggtgaacgggaccgagcgggtcatcgtgtcccagatgcaccgttcgccgggc
gtgttcttcgatcatgacaagggcaagacgcacagctcgggcaagttgctgttcgcctgc
cgcatcattccgtatcgcgggtcctggctggatttcgaattcgacgccaaggacatcgtg
ttcgcgcggatcgaccgtcgccgcaaactgccggtgaccaccctgctctatgccctgggc
atggaccaggaggcgatcatggacgcctattacgataccgttcagtacaagctgtccaag
accaagggtgccgctcagggctgggtgaccaagttcttccccgaccgcgtccgcggtacg
cgtccgacctttgacctggtcgatgccgccactggcgaagtgatcgccgaagccggcaag
aagatcaccccgcgcgcggtgaagcagctgaaagacgacgggaaggtgacccagcttctg
gtgcctttcgaaaacatcctgggaaagttcgtcgccaaggacatcatcaacgaggaaacc
ggcgcgatctatgtcgaagccggcgacgagctgacgctgacccgcgacaaggatggcgag
atcaccggcggttcgctgaaggaactgatggatgcgggtatctccgacatcccggttctg
gacatcgataacatcaacgtcggtccctacatccgcaacacgatggtggcagacaagaac
atcggccgcgaaggcgcgttgatggacatctaccgcgtgatgcgcccgggcgagccgccc
acggtcgaggccgcaagcgcgctgttcgacacgctgttcttcgatgcggatcggtatgac
ctgtccgccgtgggccgcgtgaagatgaacatgcgtctggatctggatgccgcggacacg
atgcgcaccctgcgccgcgaagatatcgtggcctgtatcaaggcgctgtgcgaactgcgc
gacggcaagggcgacatcgacgatatcgaccacctgggcaaccgtcgtgtccgttcggtc
ggcgagctgatggagaaccagtaccgcgtcggtctgctgcggatggagcgcgccatcaag
gagcgcatgtcctcggtcgagatcgacacggtgatgccgcaggacctgatcaacgccaag
ccggcagccgctgccgtgcgcgagttcttcggctccagccagctgtcgcagttcatggac
cagaccaacccgctgtccgaagtgacgcacaagcgccgcctgtcggcccttgggccgggc
ggtctgacccgcgagcgtgcgggcttcgaggtccgcgacgttcacccgacccactatggc
cggatgtgtccgattgaaacgcccgaaggtcagaacatcggtctgatcaacagccttgcg
acctatgcgcgggtgaacaagtacggtttcatcgaaacaccctaccgtcttgtgaaagaa
ggtcaggtgacggatgaggtcgtgtacctgtccgcgaccgaggaaatgcgccacaccgtg
gcgcaggccaacgcgacgctggatgccgatggcaatctcgtcaacgaactggtcaccacc
cgccagtccggcgactacacgctggcgccgcgcgagcaggtggacctgatcgacgtcagc
cccaagcagctggtgtcggttgcggcctcgctgattccgttccttgaaaacgacgacgcc
aaccgcgccctgatgggttcgaacatgatgcgtcaggcgctgccgctggtgcagaccgag
gcgccgctggtcggtaccgggatcgaaggcatcgtggcccgcgactccggtgcagcgatc
atggcgcgccgcgccggtgtgatcgaccaggtcgacgcgatgcgtatcgttgtgcgcgcc
acggaagacctggaactgggcgatgcgggtgtggacatctaccgcatgcgcaagttccag
cggtcgaaccagaacacctgcatcaaccagcgtccgctggtgaaggtgggcgatgtggtg
gccaagggcgaagtgatcgccgacggtccctgcaccgacatgggcgaactggccgtgggc
cggaacgtcatcgtcgcgttcatgccgtggaacggctacaactacgaagactcgatcctg
atttccgagcggatcgcgcgtgacgacgtctttacctcgatccatatcgaggaattcgaa
gtcgccgcacgtgacaccaagcttgggccggaagagatcacgcgcgacattcccaacgtc
ggcgaggaagccctgcgcaacctcgacgaggcgggcatcgtctacatcggtgccgatgtg
gagccgggcgatattctggtgggcaagatcacgcccaagggcgaaagcccgatgaccccg
gaagaaaagctgctgcgcgccatcttcggcgaaaaggcatcggacgtgcgcgatacctcg
ctgcgtgtgaagcccggcgatttcggcacggtcgtggaagtgcgtgtcttcaaccgccat
ggtgtggaaaaagacgaacgtgcgctgcagatcgagcgtgaagaagtcgagcgtctggcg
cgtgaccgcgacgacgagctggcgatcctggaccgcaacatctacgcccgcctcaaggac
atgatcctgggcaaggtcgcggtgaagggtccgaaaggcgtcaagccgaactcgatcatc
gacgaagagcttctgtccacgctcagccgtggccagtggtggcagctggcgcttgagaac
gaggccgatgcccagatcatggaagcgctgaacgcacagtacgaagtgcagaagcgtacc
cttgatgctcgtttcgaggacaaggtcgaaaaggtccgccgcggcgacgatctgccgccg
ggcgtgatgaagatggtcaaggtcttcatcgcggtgaagcgcaagctgcagccgggcgac
aagatggccggtcgtcacggcaacaagggtgtggtctccaaggtcatcccgatggaagac
atgcccttcctggccgacggtacgccggtcgatatctgtctgaacccgctgggcgtgcct
tcgcgcatgaacgtaggtcagatccttgaaacccacatgggctgggcgtcgcgtacgctg
ggtctgcgggtggacgaggcgctgcaggaataccgccggtcgggtgatctgaccccggtg
cgcgatgcgatgcgtcaggcttatggcgacgatgtctacgatgaaggcatcgaaggcatg
gacgaggatcagctgatcgaggcggcaggcaccatcaccaagggtgttccgatcgcaacg
ccggtcttcgacggcgcgaaagaggcggatgtgaacgatgcgctcaagcgcgctgggttc
gacacctccggtcagtcgatcctgttcgacgggcgcacgggcgagcagttcatccgcccc
gtgaccgtgggcatcaagtacctgctgaagctgcatcaccttgtggacgaaaagatccac
gcacgttcgaccgggccctacagccttgtcacgcagcagccgctgggtggtaaggcccag
ttcggtggccagcgtctgggtgagatggaggtctgggcactggaagcttacggtgccgcc
tacacgctgcaggaaatgctgaccgtcaagtcggacgacgtggcaggccggaccaaggtg
tacgagtcgatcgtcaagggcgaagacaacttcgaggccggtgtgcccgagtcgttcaac
gttctggtgaaagaagtgcgcggccttggcctgaacatggaactcctggacgccgaggac
gagtga
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