Staphylococcus epidermidis PM221: SEB_00228
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Entry
SEB_00228 CDS
T03289
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sepp
Staphylococcus epidermidis PM221
Pathway
sepp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SEB_00228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sepp03021
]
SEB_00228
03400 DNA repair and recombination proteins [BR:
sepp03400
]
SEB_00228
Enzymes [BR:
sepp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SEB_00228
Transcription machinery [BR:
sepp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SEB_00228
DNA repair and recombination proteins [BR:
sepp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SEB_00228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CDM12793
LinkDB
All DBs
Position
244664..248215
Genome browser
AA seq
1183 aa
AA seq
DB search
MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEGLLEMFRDISPIEDFTG
NLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMT
DTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGRENYDATIIPNRGAWLEYETDAKDVV
YVRIDRTRKLPLTVLLRALGFSTDQEIVDLLGDSEYLRNTLEKDGTENTEQALLEIYERL
RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANKKLHLKHRLFNQKLAEPIVNSETG
EIVVDEGTVLDRRKLDEIMDVLETNANSEVFELEGSVIDEPVEIQSIKVYVPNDEEGRTT
TVIGNALPDSEVKCITPADIVASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELT
HKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG
FIETPYRKVDLDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCRFRGNNT
VMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTG
MEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGTEHEGELDRYPLAKFKRSNSG
TCYNQRPIVSIGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAEVKDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDT
LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPL
GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDG
RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGL
DVKVMDEHDNEIEMADVDDEDAAERKVDLQQKSAPESQKETTD
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggtcaagttgtccaatatggaagacatcgtaaacgtagaaattacgcgagaatt
tcagaagtattagaattaccaaacttaatagaaattcaaacaaaatcttatgattggttc
cttaaagaaggtttattagaaatgttcagagatatttctccaattgaagatttcactggc
aacctatctttagaatttgtagattacagattaggtgaacctaaatatgatttagaagaa
tcaaaaaaccgtgacgctacttatgctgcacctcttcgtgtgaaagtgcgtcttattatt
aaagaaactggtgaagttaaagaacaagaagtcttcatgggtgattttccactgatgaca
gatacaggtacgttcgtaattaatggtgctgaacgtgttatcgtatctcaattagttcgt
tcaccatccgtgtattttaacgagaaaatcgataaaaatggacgtgaaaactatgatgca
acaatcattcctaaccgtggtgcttggttagagtatgagacagatgctaaagatgttgta
tatgttcgtatcgatagaacacgtaaattaccattgactgtattactacgtgcgctaggt
ttctcaactgatcaagaaattgttgacttattaggagacagcgaatatttacgtaataca
ttagaaaaagatgggacagaaaatacagaacaggctttattagagatttatgaacgttta
cgtcctggcgaaccaccaacagtagaaaatgctaaaagtttattatattctcgtttcttc
gaccctaaacgctatgatttagccagtgtaggtcgttataaagcgaacaaaaaattacac
ctaaaacatcgtttgttcaatcaaaaattagcagaaccaattgttaacagtgaaactggt
gaaattgttgttgacgaaggaacagtgttagatcgtcgtaaacttgacgaaatcatggac
gtattagaaacaaacgctaatagcgaagtatttgaacttgaaggtagcgtaattgacgaa
cctgtagaaatccaatctattaaagtgtatgtgcctaacgatgaagaaggtcgtacgact
actgtcattggtaatgcattacctgattctgaagttaaatgtattactccagcagatatt
gttgcctcaatgagttatttcttcaacttattgaatggcattggttatacagatgatatt
gatcatctaggtaatcgtcgtttacgttctgtcggtgagctattacaaaatcaattccgt
atcggtttatccagaatggaacgtgttgttcgtgaaagaatgtcaatacaagatacagat
tctattacgccacaacaactcattaatatcagaccagttattgcatcaatcaaagaattc
tttggtagttcacaattatctcaattcatggaccaagctaacccgttagcagagttaacg
cacaaacgtcgtttatctgctctagggcctggtggattaacacgtgaacgtgctcaaatg
gaagtgcgtgacgttcactactctcactatgggcgtatgtgtccaattgaaacacctgag
ggtcctaatattggtttaataaactcattgtcaagttatgctagagtgaatgaatttggt
tttattgaaacgccatatcgtaaagtggatttagatacaaactcaatcactgatcaaata
gattatttgacagctgatgaagaggatagttacgttgttgcacaggctaattctagactt
gatgaaaatggtcgtttcttagatgatgaagttgtttgtcgtttccgtggtaataacact
gttatggctaaagaaaaaatggattacatggacgtatcaccaaaacaagttgtttcagca
gcaacagcatgtattccattcttagaaaatgacgactctaaccgtgcgttaatgggagca
aacatgcaacgtcaagcggtgcctttaatgaatccggaagctccatttgtgggtacaggt
atggaacacgtagccgcaagagactctggtgctgcaattactgctaagcatagaggacgc
gttgagcatgttgaatctaatgaaattttagttcgtcgtttagtcgaagaaaatggaact
gaacatgaaggtgaattagatcgttatcctttagcgaagttcaagcgttcaaactctggt
acttgttataaccaacgtccgattgtatcaattggtgatgttgttgaatacaatgagatt
ttagcggacggtccttcaatggaattaggagaaatggcattaggacgaaatgtagttgtc
ggtttcatgacatgggacggttacaactatgaggatgctgtaattatgagtgaacgacta
gttaaagatgatgtatatacatctattcatattgaagagtatgagtcagaagctcgtgat
acgaaattaggacctgaggaaatcacacgtgatattccaaacgtatctgaaagtgcactt
aagaacttagatgatcgtggtatcgtttatgttggtgcagaagttaaagatggtgacatc
ttagtaggtaaagtaacgcctaaaggtgtaactgaattaacagctgaagagagattatta
cacgctatctttggtgaaaaagcacgtgaagttcgtgatacatcattacgtgtacctcat
ggtgctggcggtatcgttttagatgttaaagtctttaatcgtgaagaaggagacgacact
ctatctcctggagttaaccaattagtacgtgtatatattgtccaaaaacgtaaaatacat
gttggggacaaaatgtgtggtcgtcacggtaacaaaggtgttatttctaagattgttcca
gaagaagatatgccttatttaccagatggtcgaccaatcgatattatgttaaacccatta
ggtgtaccatcacgtatgaacattggacaagtattagaattacatttaggtatggcagct
aaaaacttaggaattcacgttgcttccccagtgtttgatggtgccaacgatgatgacgtt
tggtcaactatcgaagaagctggaatggcgcgtgacggtaaaactgttctatacgatgga
cgaactggtgaaccattcgataatcgtatttcagttggtgtcatgtacatgcttaaactt
gcacacatggtagatgataagttacatgcacgttctactggaccatactcacttgttaca
caacaaccattaggtggtaaagcacaattcggtggtcaacgtttcggtgagatggaggta
tgggcacttgaagcttatggtgctgcttatactttacaagaaatcttaacttataaatct
gatgatactgtaggtcgtgttaaaacttacgagtctatagttaaaggtgagaacatttct
agacctagtgttccagaatcattccgagtattgatgaaagaactacaaagtttaggtcta
gatgttaaagtgatggatgagcatgataatgaaatcgaaatggctgatgttgatgacgaa
gatgcagcagaacgcaaagtagatttacaacaaaagagtgctccagaatcacaaaaagaa
actactgattaa
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integrated database retrieval system
