Staphylococcus epidermidis PM221: SEB_01192
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Entry
SEB_01192 CDS
T03289
Name
(GenBank) Probable ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sepp
Staphylococcus epidermidis PM221
Pathway
sepp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SEB_01192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sepp03019
]
SEB_01192
03400 DNA repair and recombination proteins [BR:
sepp03400
]
SEB_01192
Enzymes [BR:
sepp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SEB_01192
Messenger RNA biogenesis [BR:
sepp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SEB_01192
DNA repair and recombination proteins [BR:
sepp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SEB_01192
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Peptidase_M35
Motif
Other DBs
NCBI-ProteinID:
CDM13747
LinkDB
All DBs
Position
complement(1225657..1227036)
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AA seq
459 aa
AA seq
DB search
MLKDNLKEWFGFDEFKEGQEEIIDSVLHGRHTLGILPTGSGKSLCYQLPTYILEKPTLII
SPLISLMDDQVMQMKLKGETHVACVHSGMDEVEKRDNIKRLSKSRFIYLSPEYILQPHNF
KYIAHINFGLIVLDEAHCLSEWGYDFRPHYALVGKIIHHFNSATVLALTATAPPQLETDL
SHILSLKLNVVQKSMNRENISLQHYNFNDDEGKIEWLLPFLSNSGPTIIYVSSKKRCLEL
AQMIYDSGYLTGIYHGDLSYQERQTVQQQFFNNDIPVIVATSAFGMGINKKDIRTVIHFH
LSSSPSNYLQEIGRAGRDGKQSQAISLFQPDDSFILETLLFTDIITDDDITMFETGNHLP
DEKEKILSTLNIQFTFSQLKDIFHQSYQRKRLGYMRMMGYTNLDQCRRKYLLEFFGEHPQ
SPKQCCDQDSRLEPIQILNRKKVKRKLSFNEKLYNLFET
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaaagataatttaaaggaatggtttggttttgatgaatttaaagaggggcaagaa
gaaattattgatagtgtccttcatggaaggcatacacttggaattttaccaactggtagc
ggtaaaagcttatgttatcaactccctacatatatattagaaaaaccgacattaattata
tcaccactcatttcgcttatggatgatcaagttatgcaaatgaagttaaaaggtgaaaca
catgttgcatgtgtacattccggcatggacgaagtagaaaaaagagacaatattaaacga
ctaagtaaaagtcgatttatttatttaagtccagaatatatactgcaacctcataatttt
aagtacatcgctcatatcaactttggattaatagtattagatgaagcgcactgtttatca
gagtgggggtatgattttagacctcactatgctttagttggtaaaattattcatcatttt
aattcagcaacagtgttagcactaacagctacagcaccacctcaattagaaactgattta
tctcacattttatcactcaaattaaatgtagttcaaaaaagtatgaatcgagaaaatatt
agcttacaacactataattttaatgatgatgaggggaagattgaatggctgttaccattt
ttatctaattctgggcctacaattatatatgtttcttctaaaaaaagatgtttagaacta
gctcaaatgatttatgactcaggatatctaacaggtatatatcatggagatttaagttat
caggaacgccaaacagttcaacaacagttttttaataatgacatccccgttatagtagca
acaagtgcttttggaatgggaataaataaaaaagatattcgtacagtcatacattttcat
ttatcatcttcaccatctaactatttacaagaaattggtcgtgctggtagggatggtaaa
caaagtcaagccattagtttatttcaacctgatgatagttttattctagaaacactacta
ttcactgatattatcacagatgacgatattacaatgtttgagacgggaaaccacttacca
gatgaaaaggaaaaaattttaagtactttaaatatacaattcacatttagccaacttaaa
gatatatttcatcaatcatatcaacgtaagcgactaggttatatgagaatgatgggctat
actaatttagatcaatgtcgacgtaaatacttactagaattttttggcgaacatcctcaa
agtccaaaacaatgttgtgatcaagattcaagattagagcctattcagatattgaatcgt
aaaaaggtgaaaagaaaactaagttttaatgaaaaattatataatttgttcgaaacctag
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