Prodigiosinella confusarubida ATCC 39006: Ser39006_004335
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Entry
Ser39006_004335 CDS
T05290
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera00040
Pentose and glucuronate interconversions
sera01100
Metabolic pathways
sera02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Ser39006_004335
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Ser39006_004335
Enzymes [BR:
sera01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Ser39006_004335
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
AUH03428
UniProt:
A0A2I5TFU6
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Position
complement(948403..949539)
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AA seq
378 aa
AA seq
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MKALLKPITAGLLLALCQPVFAASTATGGYATTAGGNVTGAVSKTASSMQDIIDIIADAR
YDSAGKKVKTGAYPLIITYTGNEDSLINAAAANICAQSAKDARGVEIKEFTKGITIIGAN
GSSANFGIWITKSSDVVVQNMRIGYLPGGASDGDMIRIDRSPNVWIDHNELFAANHECDG
SKDGDTTFESAVDIKKDSTYVTVSYNYIHGVKKVGLAGFSSSDTAERNITYHHNVYNDVT
SRLPLQRGGLVHAYNNLYTNVTSSGLNVRQNGNALVESNWFEDVLNPVTSRYDGSNFGKW
ELRNNNITKPADFTTYNITWTADTKPYVNADNWTTTGAYPSSIPYSYSPVSAQCVKNKLA
NYAGVSKNLATLTSSACN
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattactgaaacctataactgcggggctgttgttggcattatgtcaacccgtc
tttgccgcaagtacagcaaccggtggttatgccaccaccgcgggcggtaacgttaccggt
gcagtcagtaaaacggcatcatccatgcaagatattatcgatatcattgctgacgcccga
tacgactccgctggcaagaaagtcaaaaccggtgcctatccgctgatcatcacttacacc
ggtaacgaggactcgctgatcaatgccgctgccgccaacatttgcgcccagtcagcaaaa
gatgcccgtggggtggaaatcaaggagttcaccaaaggcatcactatcatcggtgccaat
ggttcttccgccaacttcgggatctggattacaaaatcctccgacgtagtggtacagaac
atgcgtatcggttatctgccaggcggggccagtgacggcgatatgatccgcattgataga
tcccctaatgtgtggattgaccacaacgaactgtttgctgccaatcatgaatgtgatggc
agtaaagacggcgatacaacctttgaatcggctgtggatatcaaaaaagactcaacctac
gttaccgtgtcttacaactacatccatggtgtgaagaaagtgggtctggcaggattcagc
tcgtcagatacggcagagcgcaacatcacttatcatcacaatgtttacaacgatgtcacc
tcccgcctgccgctacaacgtggcggtctggttcatgcctacaacaacctgtacaccaat
gtcaccagttctggcctgaacgtgcgccagaatgggaacgcattagtcgaaagcaactgg
tttgaagatgtgttgaacccggtgacctcccgttacgatggttccaatttcggtaagtgg
gaactgcgtaacaacaacattaccaaacctgccgacttcactacctacaacattacctgg
actgccgataccaagccttatgtaaacgcagacaactggaccaccaccggggcttacccg
tccagtattccttacagctacagcccggtcagtgcccagtgcgtaaaaaacaaactggct
aactatgctggcgtcagtaagaacctggcaaccttgaccagttcagcctgtaactaa
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