Prodigiosinella confusarubida ATCC 39006: Ser39006_009005
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Entry
Ser39006_009005 CDS
T05290
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera00040
Pentose and glucuronate interconversions
sera01100
Metabolic pathways
sera02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Ser39006_009005
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Ser39006_009005
Enzymes [BR:
sera01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Ser39006_009005
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Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
AUH04246
UniProt:
A0A2I5TI56
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Position
complement(1949655..1950863)
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AA seq
402 aa
AA seq
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MNNTSMTSVSKMKATGCSSFSCGVLTTSKHLLATMITAAVMVSSANAASVLTSEALTTAP
SAGWASQSGSTTGGAKASSSNIYTAKNISEFKTALAKGSTAKIIQITSPIDISGGTAYTS
SSDQKSRSQLSIPSNTTIIGIGSKGKFTNGSLIIKGVSNVIVRNIYIQTPIDIAPKYEDG
DGWNAEWDAMNIDNSDHVWVDHVTITDGSFTDDQYTTKNGETYVQHDGSLDIKKGADYIT
VSNSRFELHDKTILIGHSDSNSSQDKGKLHVTFFNNVFDRVTERTPRVRFGNIHAFNNVY
LGDKKHAVYPYLYSFGIGTSGSLLSEKNGFNISNLTDKCKIVKNFNGTIFSDKGSIFNGS
SVDLSSCGFTAYSSTIPYSYTAKTMTTSLMTTINNNAGYGKL
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacacgagtatgacttccgtttctaaaatgaaagccacaggatgttcctctttt
tcctgtggcgtgcttaccacttcaaaacatttgctggctaccatgatcacagccgccgta
atggtatcaagcgcaaacgcagccagcgttcttaccagcgaagcccttactacagcgcct
tccgctggttgggcatctcagagtggttctaccaccggaggtgccaaagccagttcatcc
aatatctataccgccaaaaatatctctgaattcaaaaccgcactggcaaaaggcagtacg
gccaaaatcatccagattaccagtccaattgatatcagtgggggcacagcctacaccagc
tcatcagatcagaaatcccgcagccaactcagcatcccctccaataccactatcatcggt
attggcagcaaaggcaaattcaccaatggttcgttaattatcaaaggcgtcagcaacgtt
atcgtacgtaacatctatatccaaacgccgatcgatatcgcgccgaaatatgaagatggt
gatggctggaatgctgaatgggatgccatgaacattgataactccgatcatgtatgggtt
gaccatgtcactattactgatggcagctttacagatgatcaatatacgacgaaaaacggc
gaaacctatgtgcagcacgatggttcactggatatcaaaaaaggggccgactacatcacc
gtatccaatagccgctttgaattacacgataaaaccattctgattggccacagcgatagc
aactcctcacaggataagggaaaactgcacgttaccttctttaacaacgtgtttgaccgt
gtgactgagcgtaccccacgcgttcgcttcgggaatatccatgcattcaacaacgtctat
ttaggggacaaaaaacacgcagtctacccttatctctatagcttcggtatcggtaccagt
ggcagtctgctttctgaaaaaaatggatttaatatcagtaacctcactgataaatgcaag
attgtaaaaaactttaatggcaccattttctcagataaaggttctatctttaacggcagc
tcagtcgatctgtccagctgtggattcactgcctattcatcaacaatcccttacagctat
acggcgaaaacgatgaccaccagtttgatgacgaccatcaacaataatgccggatacggt
aaattataa
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