KEGG   Spiroplasma eriocheiris: SERIO_v1c00810
Entry
SERIO_v1c00810    CDS       T03974                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
seri  Spiroplasma eriocheiris
Pathway
seri03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:seri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SERIO_v1c00810 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:seri03021]
    SERIO_v1c00810 (rpoB)
   03400 DNA repair and recombination proteins [BR:seri03400]
    SERIO_v1c00810 (rpoB)
Enzymes [BR:seri01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SERIO_v1c00810 (rpoB)
Transcription machinery [BR:seri03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SERIO_v1c00810 (rpoB)
DNA repair and recombination proteins [BR:seri03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SERIO_v1c00810 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AKM53683
UniProt: A0A0H3XGS0
LinkDB
Position
82190..86080
AA seq 1296 aa
MALKEKEFGHYAKRIDYTKVSGNLDLPNLIEIQTETYDWFKKQGISQVFEEVFPIVGHEG
NVVLEMLDWEFREPRRTIPQAKEESKIYEAPIYSNLKLTINSKDLEIEKGIIKGDAELIK
SWIEEKIGHNITILKKTADVVYFDIHSGDEEATCIATIKERTDLKLVIEITIEKIGEVFF
GDFPLMTGKGTFIVNGSEKVVVSQLVRSPGAYYKKDFNRKTGENIYYVDLIPSRGTWLEF
ESDMKKIKAGKEERFDTVYYVKIDKSRKVSVASLFTALGVTRETVFDIFGDNKYVGNTYD
LEQYSGDINYDQQVAVQEIYKKIRAGETATPDGATKYLYGLLFDKRKYDLTKAGRFKLIQ
KLSVENRIYNKVLAEDIKDVNGKVIFSEGTLFDKENVNKLKEVLKAGACLEEVYFNTEIP
GNNRIQKIKVYVDNELRNQVENIIGIDPNATDEFVTVPDILATFSYLLNLKHDIGEVDDI
DHLGNRRVRTIGELLQNQFRIGLLRIEKNVKEKMSTSNIFKMKPSNIINNKPLSAIIGEF
FNLSQLSQFMDQTNPLAELTNKRRLTALGPGGLSRERAGLEVRDVHYSHYGRICPIETPE
GPNIGLINNLATYAKINSFGFIETPYRKVIDNKVTSQNDYLTADEEKNYVVAQANIRLSD
KGEILDDQVIARFQGENIIALRTEVDYVDVSPKQIVSIATSCIPFLENDDANRALMGANM
QRQAIPLINPQSPYVGTGVEYAAAKDSGLAIVSQYDGVIDFVDATKIILKTKEGLKTYNL
DTFVRSNQGTSLTHVPLVKQGQKVVKGQILADGPSIDKGELALGQNVVVAFTTWNGYNYE
DAIIVSERLVADDVFTSIHIEEYTIERRQTKQGAEEITREIPNISENARKFLDDDGLVII
GTEVKPGDILVGKVTPKGQTQLSPEDKLLQAIFGEKSKNVKDNSLRVPNGGEGIVQAIKR
FPREKYELAADVLEVVKVYIVQKRKIQEGDKMAGRHGNKGVISKILPIEDMPHLEDGTPV
DIMLNPLGVPSRMNIGQVLEIHLGMAAKKLGQKVSTPVFDGMTNDELIELMDKAGMKNFG
KEILVDGRTGEKFDNPVSVGVMYMLKLSHMVDDKLHARNVGPYSLITQQPLGGKAQNGGQ
RFGEMEVWALEAYGAAHTLREILTIKSDDIKGRTRAYEAIVKDKKIPEPGIPESFNVLTR
EIQGLGFNIQMIDEDGNIKNINSYDDEDSYVIEELTDTTIDEFEDEFDISNFILNNDNIE
NDEFELDIEEDPNADEDSYDDGDHNPIKPDYQSDEE
NT seq 3891 nt   +upstreamnt  +downstreamnt
atggcattaaaagaaaaagaatttgggcattacgctaaaagaattgattatacaaaagta
agtgggaatttggacctgcctaacttaattgaaattcaaactgagacgtatgattgattt
aaaaaacaaggaattagccaagtgttcgaagaagtatttccaattgttgggcatgaagga
aatgttgttttagaaatgttagattgagaatttagagaaccacgacgaacaattccccaa
gctaaagaagaatctaagatttatgaagcaccaatttattcaaatttaaaactaacaatt
aattcaaaagatttagaaattgaaaaaggaattattaaaggtgacgctgaattaattaag
tcatgaattgaagagaaaatcgggcataatattactattttgaaaaaaacagctgatgtt
gtgtatttcgacatccattcaggtgatgaagaagcaacttgcattgcaacaattaaagaa
cgcacagatttaaaattagtcattgaaatcacaattgaaaaaattggtgaagtttttttt
ggtgattttccgttaatgactggaaaaggaacttttattgttaatggttcagaaaaagtt
gttgtttcacaattagtccgttccccaggggcttattataagaaagattttaaccgtaaa
accggagaaaacatttactatgttgatttaattccgtctcggggaacatggttggaattt
gaatcagatatgaaaaaaattaaggccgggaaagaagaacgttttgatactgtttattat
gtcaaaattgataaatcaagaaaagtttcggttgctagtttatttacagccttaggagta
actagagaaactgtttttgatatttttggtgataataaatatgttggaaacacttatgat
ttagaacaatatagtggtgatattaactatgatcagcaagtagcagtccaagaaatttat
aaaaaaatccgtgcgggagaaactgccactcctgatggagctactaaatatttatatgga
ttattatttgataaacgtaaatatgatttaacaaaagccggaagattcaaattaattcaa
aaattatcagttgaaaaccgaatttataataaggttttagcagaagatattaaagatgtt
aatggtaaagtaatttttagtgaaggaactttatttgataaagaaaatgttaataaatta
aaagaggttttaaaagcgggggcatgtttagaagaagtttactttaatactgaaattcca
gggaataatagaatccaaaaaattaaagtatatgtggataacgaattaagaaatcaagtt
gaaaatattattggaattgatccgaatgcaacagatgaatttgtgacggtaccagatatt
ttagcaactttctcatatttattaaacttaaaacatgatattggagaagttgatgatatt
gatcacttaggaaatcgtcgggttcggacaattggagagttactacaaaaccaatttcga
attgggcttttaagaattgaaaaaaatgttaaagaaaaaatgtcaacttcaaatattttc
aaaatgaagccatcaaatattattaataataagcctttatcagcaattattggtgagttt
tttaacttgtcacagttgtcacagtttatggaccaaactaaccccttagcagagttaaca
aacaagcgccggttaacagccttaggaccaggtgggttatcacgtgaacgtgctggttta
gaagtacgggatgttcactactcacactatggaagaatttgtccaattgaaactccagaa
ggacctaacattggattaattaataacttagcaacttacgcaaaaattaattcatttggt
tttattgaaacaccatatcgtaaagtaattgataataaagttactagtcaaaatgattat
ttaaccgctgatgaagaaaaaaattatgtggtggcgcaagctaacattcgtttaagtgat
aaaggtgaaattttagacgaccaagtaattgctcggtttcaaggcgaaaacattattgca
ttacgaactgaagttgattatgttgacgtgtcaccaaaacaaattgtttcaattgcgaca
agttgtattccgttcttggaaaatgatgatgctaaccgggcattaatgggagctaacatg
caacgacaagcaattccactaattaatccccaatcaccatatgtgggaaccggagttgag
tatgcggctgcgaaagactcagggttagcaattgtttcccaatatgatggcgtaattgat
tttgttgatgcaacaaaaattattttaaaaaccaaagaggggttaaaaacatataaccta
gatacttttgtgcgtagtaaccagggaacttcattaacgcatgttccgttagttaaacag
ggccaaaaagttgtgaaagggcaaattttagcagatggtccatcaattgataaaggtgaa
ttagccttaggacaaaatgttgtagttgcttttacaacttgaaatggttataactatgag
gatgcgattattgtttctgaacggttagttgcggatgatgtttttacttcaattcatatt
gaagaatatacaattgaaagacgccaaacaaaacaaggggccgaagaaattacgagagaa
attcctaatatttctgaaaatgcgcggaaattcttagatgatgatgggttagttattatt
ggaactgaagttaaaccaggtgatattttggtgggaaaagttactccaaaagggcaaact
caactgtcaccagaagataagttattacaagcaatttttggtgaaaaatcaaaaaatgtt
aaagataattctttacgagtaccaaatggtggggaaggaattgtgcaagcaattaaacga
ttcccacgtgaaaaatatgaactagcagcggatgtgctagaagttgttaaagtttatatt
gttcaaaaacgtaaaatccaagaaggagataaaatggctggtcgtcatggtaacaaaggg
gttatttcaaaaatcttaccaattgaagatatgccacatttagaagatggaaccccagtt
gatattatgttaaacccattaggggtgccatcacggatgaatattgggcaggtgctagaa
attcatttagggatggcagctaaaaaattaggacaaaaagtttcaacgccagtttttgat
ggaatgacaaatgatgaactaattgagttaatggataaagcagggatgaaaaactttggg
aaagaaattttagttgatggtcgtactggtgaaaaatttgataacccagtttcagtggga
gtaatgtatatgttaaaactatcacatatggttgatgacaaattacatgcacggaatgtt
ggcccatactcattaattacccaacaaccattaggaggaaaagcccaaaatgggggacaa
cgttttggagagatggaagtttgggcgttggaagcttatggagcagcgcataccttacgc
gaaattttaactatcaaatctgatgatattaaaggaagaacccgtgcttacgaagcaatt
gttaaagataagaaaattcctgaaccaggaattcctgaatcatttaatgttttaacgcgt
gaaattcaagggttagggtttaatattcagatgattgatgaagatggaaacatcaaaaat
atcaatagttatgatgatgaagatagttatgtaattgaagaattaactgatacaacaatt
gatgaatttgaagatgagtttgatatttcaaactttattctaaataacgataatattgaa
aatgatgaatttgaattggatattgaagaagatccaaatgcagatgaggatagttatgat
gatggtgaccataaccccattaaaccagattatcaaagtgatgaagagtag

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