Serratia sp. Tan611: TAN611_0252
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Entry
TAN611_0252 CDS
T10950
Symbol
rpoB
Name
(GenBank) RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sert Serratia sp. Tan611
Pathway
sert03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sert00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TAN611_0252 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sert03021
]
TAN611_0252 (rpoB)
03400 DNA repair and recombination proteins [BR:
sert03400
]
TAN611_0252 (rpoB)
Enzymes [BR:
sert01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TAN611_0252 (rpoB)
Transcription machinery [BR:
sert03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TAN611_0252 (rpoB)
DNA repair and recombination proteins [BR:
sert03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TAN611_0252 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
CAE1141375
LinkDB
All DBs
Position
Tan611:287935..291963
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALNYTSEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDDIKSIEVPVEYIAGKVVAKD
YIDTNTGELICSANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SQEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDDDGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVAGGVEADKLSQLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKADFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQQQEVAK
LREFIQKAYDLGDDVCQKVDLNTFSDDEVMRLAENLKKGMPIATPVFDGARETEIKKLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaagcgtccacaa
gtgttggatgtgccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccagaagggcagtacggccttgaagccgccttccgttctgtattcccaatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtgttc
gacgtcaaagagtgccagattcgtggtgtgacgttctctgcaccgctgcgcgttaaactg
cgcctggtcatctatgagcgagaagcaccagaaggtacggtcaaagacatcaaggaacaa
gaagtctacatgggcgagattccgctcatgaccgaaaacggtacctttgttattaacggt
actgagagggttatcgtatcccagctgcaccgtagtcctggcgtattcttcgacagcgat
aagggtaaaacccactcttcgggtaaagtgctgtataacgcacgcatcatcccttaccgc
ggttcctggttggacttcgagtttgacccgaaagacaacctgttcgtgcgtatcgaccgc
cgtcgtaaactgccggcctcgatcattctgcgcgcgctgaactacacctcagaacagatc
cttgacctgttcttcgagaaagttgttttcgaaatccgcgacaacaagctgcagatggag
ctggttcctgagcgtctgcgtggtgagaccgcttcgtttgatatcgaagccaacggcaaa
atctacgttgagaaaggccgtcgcatcaccgctcgccatatccgtcagcttgaaaaagac
gatatcaagagtatcgaagtgccggttgagtacatcgcgggcaaagtggtcgccaaagac
tacatcgataccaataccggcgaactgatctgctccgctaacatggagctgtcgctggat
ctgctggcgaagctgagccagtctggtcacaagcgtatcgaaacgctgttcaccaacgat
ctggatcacggcgcctacatctccgagacgctgcgtgtcgacccgaccaatgaccgcctg
agcgcgctggttgagatctaccgcatgatgcgtcctggcgagccaccgacgcgtgaagca
gcagaaagcctgttcgagaacctgttcttctccgaagaccgctacgatctgtccgcggtc
ggccgtatgaagttcaaccgttctctgctgcgcgacgagatcgaaggttcaggtatcctg
agccaggaagacatcatcgatgtgatgaagaagctcatcgacatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgcatccgctccgtgggcgaaatggct
gagaaccagttccgcgtaggtctggtgcgcgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgacctggacaccctgatgcctcaggacatgatcaacgccaagccgatttcggcg
gcggtgaaagagttcttcggctcaagccagctgtcccagtttatggaccagaacaacccg
ctgtccgagatcacgcacaagcgtcgtatctccgcactgggcccgggcggtctgacccgt
gagcgtgccggcttcgaagtacgtgacgtacacccaacccactacggtcgtgtatgtcca
atcgaaaccccggaaggcccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggcgtggttacc
gatgaaatcaattacctgtccgccattgaagaaggcaactttgttatcgcccaggctaac
tccaacctggatgatgacggccgcttcgtggaagatctggtcacctgccgtagcaagggc
gaatccagcctgttcagccgcgatcaggttgactatatggacgtttccacccagcaggtt
gtatccgttggtgcgtctctgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggtgccaaccctgcgtgctgacaagccgttggtc
ggtaccggtatggaacgcgcagtagcggttgactccggcgtaaccgccgttgccaaacgc
ggcggtgtgatccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggcatcgacatttataacctgaccaagtacacccgttccaac
cagaacacctgcatcaaccagatgccgtgtgtcaacctgggcgagcctatcgagcgcggc
gacgtgctggcagacggcccgtctaccgatctgggtgaactggcgctgggtcagaacatg
cgtgtggcgttcatgccttggaacggttacaacttcgaagactccatcttggtgtccgaa
cgcgtagtccaggaagaccgcttcaccaccatccatattcaggaactggcttgcgtgtcg
cgcgacaccaaactggggcctgaagagatcaccgccgatatccctaacgtgggtgaagct
gcgctctctaaactggatgaatccggtatcgtatacatcggtgcggaagtgaccggcggc
gacattctggttggtaaggtaacgccgaaaggcgagacccagctgacgccagaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtccgatgtgaaagactcttctctgcgtgtg
ccgaacggcgtttccggtaccgttatcgacgtacaggtctttacccgcgatggcgtggaa
aaagacaagcgtgcgctcgaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatcctggaagccggtctgtttgcgcgtatccacgcggtgctggtt
gccggcggcgttgaagctgacaagctgagccaactgccgcgcgatcgctggctggaactg
ggcctgaccgacgaagagaagcaaaaccagctggagcagctggccgagcagtacgacgaa
ctgaaagccgacttcgagaagaaactggaagccaagcgtcgtaagatcacccaaggcgac
gatctggcacctggcgtgctgaaaatcgtcaaggtgtacctggcggttaaacgtcagatc
cagccgggtgataaaatggcaggtcgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcctggaaacccacctgggtatggcg
gcgaaaggcattggtgagaagatcaaccagatgctcaagcagcagcaggaagtggccaaa
ctgcgtgaattcatccagaaagcctacgatctgggtgacgacgtttgccagaaagtcgac
ctgaacaccttcagcgatgacgaagtgatgcgtctggcagagaacctgaaaaaaggtatg
ccaatcgcaacgccggtgttcgatggtgcgagagagactgaaatcaagaaactgctggaa
atgggcggtatcccgacctccggtcagattacgctgttcgatggccgtaccggcgagcaa
tttgagcgccaggtaaccgtaggctatatgtacatgctgaaactgaaccacctggttgac
gataaaatgcacgctcgttcaaccggttcttacagcctggttacgcagcagcctctgggt
ggtaaagcgcagttcggtggccaacgcttcggtgagatggaagtgtgggcgctggaagca
tacggcgcagcttataccctgcaggaaatgcttaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgaccaccgtatggaaccgggcatgccg
gaatccttcaacgtattgttgaaagagatccgctcgctgggtatcaacatcgaactggaa
gacgagtaa
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integrated database retrieval system
