Ornithinimicrobium pratense: FY030_11990
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Entry
FY030_11990 CDS
T06221
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
serw
Ornithinimicrobium pratense
Pathway
serw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
serw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FY030_11990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serw03021
]
FY030_11990
03400 DNA repair and recombination proteins [BR:
serw03400
]
FY030_11990
Enzymes [BR:
serw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FY030_11990
Transcription machinery [BR:
serw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FY030_11990
DNA repair and recombination proteins [BR:
serw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FY030_11990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QFG69328
UniProt:
A0A5J6V6C5
LinkDB
All DBs
Position
complement(2602226..2606149)
Genome browser
AA seq
1307 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRGWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAGVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITHVDEDGRHSDLPSLEAQIQNEKKVLENRRDADVEGRAKKLESD
LAELEAEGARADAKRKVRDGAEREMNQIRRRADQQIERLEQVWDRFRNLKVQDLEGDEIL
YREMRDRFGMYFEGGMGAAALQKRLQTFDLTAEAAHLREIIATGKGQRKTRAIKRLKVVT
SFLQTKNEPAGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLRLHQCGLPKQMALELFKPFVMKRLVDLDHAQNIKSAKRMVERGR
SVVWDVLEEVITDHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMIIGLFHLTSDAWVEPETAY
LLDEDGNRHLRSFGSVAEARMAFDAGQIELGSTISLRLAQTAPPAGFELPEGTEVTEDGV
ASNFTLETTLGRAIFNDSLPPNYPYVTDVVDKKRLSGIVNDLAERYTKVQVAASLDSLKD
SGFYWATRSGTTVAVSDVQTPERKVEILSTYEAKASKVQLQYERGLITDDERRQELIEIW
TQATNEVARELETTMPKDNTIYRMVTSGARGNWFQLRQIAGMRGLMANPKGEIIPRPIKS
NFREGLSVLEFFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGFV
MPIAQAGLSGGLRQHDDVETSVYARTLAESVERDGEVLAQAGIDLGDVVIDRLVEAGIEE
VKVRSVLTCESLVGTCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGG
VAGDDITQGLPRVVELFEARTPKAVAPIAEATGRVQVEDTDKTRRVVLTPDDGSEEQAYP
VSRRSRLLVSDGDHVEVGTQLIVGAIDPKQVLRILGPRATQQHLVDQVQGVYRQQGVSIH
DKHIEVIVRQMLRRITVIEAGDAELLPGTLVERGRFEGENRRVVSEGGRPASGRPELMGI
TKASLATDSWLSAASFQETTRVLTEAAMEAKSDPLLGLKENVILGKLIPAGTGLTRYRNL
TVEPTEEAKAAAYAVPDYEDFDYAGAFGAGSGEAVRLDDLPMDEQRF
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttctttgacgagctgcgcattggcctggccacggcggaggacatc
cgtggctggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
cccgagaaggacggcctcttctgcgagaagattttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaagtgacccgcgccggcgtgcgccgggagcggatgggccacatcgagctggccgccccc
gtcacccacatctggtacttcaagggtgtcccgtcgcgcctgggctacctgctcgacctg
gctccgaaggacctggagaaggtcatctacttcgcggcctacatgatcacccacgtcgac
gaggatggccggcacagcgacctgcccagcctcgaggcgcagatccagaacgagaagaag
gtcctggagaaccgtcgggacgccgatgtggaggggcgggccaagaagctggagagcgac
ctggccgagctggaggccgagggtgcccgggccgacgccaagcgcaaggtccgtgacggt
gccgagcgggagatgaaccagatccgccgccgggccgaccagcagatcgagcgccttgag
caggtctgggaccgcttccgcaacctcaaggtccaggacctggagggcgatgagatcctc
taccgcgagatgcgtgaccgcttcggcatgtacttcgagggcggcatgggtgcggcggcg
ctgcagaagcgcctgcagaccttcgacctcacggccgaggccgcacacctgcgtgagatc
atcgcgaccggcaagggccagcgcaagacccgcgccatcaagcggctcaaggtcgtcacc
agcttcctgcagaccaagaacgagccggccggcatggtgctggacgccgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctggacggtggccggttcgcgacctcggacctg
aacgacctctaccgtcgtgtcatcaaccgcaacaaccgcctcaagcggctgctggacctg
ggcgcgccggagattatcgtcaacaacgagaagcggatgctgcaggaggccgtggacagc
ctgttcgacaacggccgtcgcggccgtgcggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacatgctcaagggtaagcagggccggttccggcagaacctgctgggcaag
cgcgtggactactccggccgttcggtcatcgtggtcggcccgcagctgcgcctgcaccag
tgcggtctgcccaagcagatggcgttggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctcgaccacgcgcagaacatcaagtccgccaagcggatggtcgagcggggccgc
agcgtggtctgggacgtgctcgaggaggtcatcaccgaccaccccgtgctgctcaaccgg
gcgcccaccctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gcgatccagatccacccgttggtctgcaccgccttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtcggcagaggcgcaggccgaagcccggatcctgatgctg
tcctccaacaacatcctcaagccggcggacggccgcccggtcaccatgcccacccaggac
atgatcatcgggttgttccacttgaccagcgatgcgtgggtggagccggagacggcctac
ctgctcgacgaggacggcaaccggcatctgcgctccttcggctcggtcgccgaggcccgg
atggctttcgacgccggccagatcgagctcgggagcaccatctcgctgcggctggcccag
accgcgccgccggctggcttcgagctgcccgagggcaccgaggtcaccgaggacggggtc
gcctccaacttcaccctggagacgacgctggggcgggcgatcttcaacgactccttgccg
ccgaactacccctacgtcaccgacgtggtggacaagaagcggctctccgggatcgtcaac
gacctcgccgagcgttacaccaaggtgcaggtcgcggccagtctggactcgctgaaggac
tccggcttctactgggcgacccgctcgggcaccacggtggccgtctccgacgtgcagacg
ccggagcgcaaggtcgagatcctgtccacctacgaggccaaggcgagcaaggtccagctg
cagtacgagcggggtctgatcaccgacgacgagcgccggcaggagctcatcgagatctgg
acccaggccaccaacgaggtcgcccgggagctggagaccacgatgcccaaggacaacacc
atctaccggatggtcacctcgggtgcgcgtggtaactggttccagctgcgccagatcgcc
ggtatgcgtggcctgatggccaaccccaagggtgagatcatcccgcggccgatcaagtcc
aacttccgtgagggcctgtcggtgctggagttcttcatctccacgcacggcgcccgcaag
ggtctggcggacaccgcgctgcggaccgcggactcgggctacctgacccgtcgtctggtg
gacgtcagccaggacgtcatcatccgtgaggacgactgtggcaccgagcgtggcttcgtc
atgccgatcgcccaggcgggcctgagcggtgggctgcgtcagcacgacgacgtcgagacc
tccgtctacgcccgcacgctggcggagtcggtcgagcgcgacggggaggtgctggcgcag
gccggcatcgacctgggcgacgtggtcatcgaccgtctggtcgaggccgggatcgaggag
gtcaaggtccgttcggtcctgacctgcgagtcactcgtcggcacctgcgccaagtgctac
ggccgcagcctggccaccggcaagctggtcgacatcggcgaggccgtcggcatcatcgcc
gcccagtcgatcggtgagcccggcacccagctgacgatgcgcaccttccacaccggtggt
gtggccggtgacgacatcacccagggtctgccgcgtgtggtggagctgttcgaggcccgc
acccccaaggcggtcgccccgatcgccgaggccaccggccgggtgcaggtcgaggacacc
gacaagacccgccgcgtcgtcctcaccccggacgacggctccgaggagcaggcctacccg
gtcagcaggcgctcgcgcctgctggtcagcgacggcgaccacgtcgaggtcggcacccag
ctgatcgtcggtgcgatcgaccccaagcaggtcctgcgcatcctgggcccgcgcgccacc
cagcagcacctggtcgaccaggtgcagggcgtctaccgccagcagggtgtctcgatccac
gacaagcacatcgaggtcatcgtccggcagatgctgcgccggatcacggtcatcgaggcc
ggcgacgccgagctgctgcccggcacgctggtcgagcgcggccggttcgagggcgagaac
cgtcgggtcgtctccgagggcggacgccccgcctcgggtcgtccggagctgatggggatc
accaaggcctcgctggcgaccgactcctggctctccgcggcctccttccaggagaccacc
cgcgtcctcaccgaggccgcgatggaggccaagagcgacccgctgctgggcctgaaggag
aacgtcatcctcggcaagctgatccccgcggggaccggcctgacccgctaccgcaacctc
accgtggagcccacggaggaggccaaggctgcggcctatgccgtgccggactacgaagac
ttcgactacgccggcgccttcggtgccggctccggcgaggccgtgcgtctggatgacctg
ccgatggacgagcagcgcttctga
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