Suncus etruscus (white-toothed pygmy shrew): 126013935
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Entry
126013935 CDS
T09902
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04151
PI3K-Akt signaling pathway
setr04510
Focal adhesion
setr04512
ECM-receptor interaction
setr04820
Cytoskeleton in muscle cells
setr04974
Protein digestion and absorption
setr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
126013935 (COL9A3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126013935 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
126013935 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
126013935 (COL9A3)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
126013935 (COL9A3)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
126013935 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
setr00535
]
126013935 (COL9A3)
Proteoglycans [BR:
setr00535
]
Extracellular matrix (ECM) proteoglycans
Others
126013935 (COL9A3)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
126013935
NCBI-ProteinID:
XP_049633114
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Position
7:9276456..9287081
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AA seq
685 aa
AA seq
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MAPASMPAQLLLSLFLAAAALAGSNAQKMGPRGPAGPQGPPGKPGKDGIDGEVGPPGLPG
APGPKGAPGKPGPPGEAGLPGLPGIDGLTGRDGPPGPKGTPGERGSLGPPGPPGLGGKGL
PGPPGETGVSGLPGGIGLRGPPGPSGLPGLPGPPGPPGAPGHSAVLPEGAPDLQCPAVCP
PGPPGPPGMPGFKGPSGYKGEQGEVGKDGEKGTPGPPGPAGIPGTVGLQGPRGQPGFPGP
LGAPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDSGRPGPKGVSGMPGPGGE
PGMPGKDGRDGVPGVDGEKGEAGRNGAPGEKGPNGLPGLPGRAGVKGEKGELGQAGELGE
AGPSGEPGLPGDAGAPGERGEAGHRGSTGALGPQGPPGAPGIRGFQGQKGNPGDPGLPGP
QGLRGGAGDQGPGGVTGPKGGQGIAGSDGLPGDRGDLGPSGPVGPKGESGNRGEPGPKGI
QGPNGTRGVDGVPGPPGPLGLPGAPGVPGITGRAGVPGKESSEQHIRELCGGLISEQIAQ
LAAHLRKPLEPGSIGRPGPAGPPGPPGPPGSIGHPGARGAPGYRGPPGELGDPGPRGTPG
DRGDKGAAGKGLDGPDGDQGLQGPPGVPGASRDGHDGAHGEPGLPGDPGLQGAVGAQGTP
GICDTSACQGAVAAGAGEKSGPRSS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggccccagcctccatgccagcacagctccttctctcattgttcctggccgcagcagct
ctggccggctccaacgcacagaaaatgggaccccgaggtcccgccggccctcaaggacca
cctgggaagccaggcaaggatggcattgatggagaagtcggtccccctgggctgcctggg
gctccgggacccaaaggagcacccgggaaaccagggcctccaggagaggcggggctccca
ggactgccggggatagacggtctgaccgggagggatggacctcctgggcccaagggcaca
cctggagaacggggaagcctgggacccccaggacctcctgggctggggggcaaaggactc
ccaggaccccctggagagacaggagtaagtggcctcccaggcgggatcggcctacggggt
cccccggggccctcgggactcccaggcctgcctggccctccaggacctcctggtgccccg
ggccactccgcagtactcccagaaggtgctcctgacctgcagtgtccagctgtctgccca
ccagggccccctgggccccctggaatgccagggttcaaggggcccagcggctacaaaggg
gagcagggagaagtcggcaaggacggcgagaagggtacccctgggcccccagggcctgct
ggtattccgggtaccgtggggctacaggggcccaggggacagccaggattcccagggcct
ctcggggcccctggagaccggggtcccattggattccgagggcctccgggcatcccagga
gcacctggaaaagcgggggacagaggagagcgaggcccagagggattccgtggccccaag
ggagactcgggtagacccggtcctaaaggagtatccggaatgcccggaccaggtggagag
ccaggcatgcctggcaaggacggccgagacggtgtgcccggagtggatggcgagaaggga
gaggctggccgtaatggtgcccccggtgagaagggccccaacgggctaccgggtctcccc
ggacgagcaggggtcaagggtgagaagggagaactgggccaagctggagaactgggcgag
gcgggaccctccggagaaccgggcctccccggagacgccggagcccccggggaacgaggc
gaagctggacacaggggctccacgggggctctgggcccacaaggccctcccggagctcct
ggcatcagaggcttccagggccaaaagggcaaccctggagaccctgggctgccaggaccc
cagggcctccgagggggtgctggagaccagggccccggaggagtgactggacccaaggga
gggcagggtatcgcaggctctgatggcctccctggagacagaggggacctgggtcccagc
ggccccgtagggcccaaaggagagtccggcaatcgaggggagccaggccccaaaggcatc
cagggccccaatggcaccagaggcgtggacggtgtccctgggccccctgggcccctgggc
ctgcctggtgcaccgggtgtgcctggcatcaccgggagagcgggtgttccgggcaaagag
agcagcgagcagcacatccgagagctatgtgggggcctgatcagcgaacaaatcgcgcag
ctggcagctcacctgaggaagcccctggagccaggttccatcggccggccgggtcctgcg
gggcctcctggccccccgggcccccctggctccatcggccaccctggagctcgaggtgcc
cctggatatcgtggtccccctggggagctgggagaccctggacccagaggcactcctggg
gacagaggtgacaaaggtgcggcaggcaagggactggacggacctgatggagaccagggg
ctccaaggacccccaggggtgcctggtgccagcagagacggccatgacggagcccatggc
gagcccggcctccctggagatcccggcctgcagggggctgtgggcgcccaggggaccccc
ggcatctgtgacacctcagcctgccaaggggctgtggcggcaggggccggggagaaatca
ggcccgagaagctcctaa
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