Shewanella eurypsychrophilus: FM038_016795
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Entry
FM038_016795 CDS
T07746
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
seur
Shewanella eurypsychrophilus
Pathway
seur03030
DNA replication
seur03430
Mismatch repair
seur03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
seur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FM038_016795 (dnaE)
03430 Mismatch repair
FM038_016795 (dnaE)
03440 Homologous recombination
FM038_016795 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seur03032
]
FM038_016795 (dnaE)
03400 DNA repair and recombination proteins [BR:
seur03400
]
FM038_016795 (dnaE)
Enzymes [BR:
seur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FM038_016795 (dnaE)
DNA replication proteins [BR:
seur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FM038_016795 (dnaE)
DNA repair and recombination proteins [BR:
seur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FM038_016795 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QPG58888
UniProt:
A0A549ZXF0
LinkDB
All DBs
Position
complement(3986672..3990145)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPSFVHLRVHSDYSMSDGLAKIKPILSKVSELGMPAVALTDQTNLCGLVKFYGACHGA
GVKPIIGADFWVKVPGFDKDLCSVTVLAMDNDGYLNLTLLISDAYLRGHINDRAVIDHEW
LAKYNKGLMLLSGGRHGDIGRALLKGNQPQVDSLVEFYQTHFPDRYYLELLRTNRPDEET
YLHLAVELAEQKGLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADPRRPKKYSNQQYF
KSSDEMRELFEDIPEAIENTVEIAKRCNVTVRLGEYFLPDFPTGEQSIEDFLVDVSEKGL
EDRLEFLFPDPAVRAEKRPEYDNRLDIELKVINQMGFPGYFLIVMEFIQWGKDQDIPIGP
GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPGMTLAKAFEVEPA
LQESYDGNEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPIYCDSEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKQKKLGKDPIRIESIPLDDAKSFRLL
QRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIERKHGREA
VSYPDAEYQHDSLQWVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKKPEEM
AKQRGTFKEGSINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
EFMAAVMSADMDNTDKIVILVDECERMQQPLLPPDVNKGLLKFNVDEEGQIVYGIGAIKG
VGDGPVDSILQARKDGPFKDLFDFCARVDLKKLNKRIMEKLIYAGALDSLGPHRASMMAT
LPEAVRAADQNAKAEAIGQHDMFGLLNDDQADTKQQFVQCTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARSIIDMGEARNHFAS
AVEVDIDSDLVDETWLDSFKQVVEPWNKGAVPIIVNYAQPKAKAQFKLGDNWRVNPTDEL
MLALETLTGAGKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatccaagttttgtgcatctgcgcgttcatagtgattattccatgtctgacggt
ttggcaaaaattaagccgatattatctaaggtgtcagagcttggtatgccggctgttgca
ttaacggatcagactaacttatgtggcctggtgaagttttatggcgcgtgccatggtgcc
ggggtcaaaccgattattggcgccgacttttgggtaaaagtaccaggattcgataaagat
ttgtgttccgtgaccgttttggccatggataacgatggttatttgaacttaacgcttctg
atcagtgacgcttatcttagaggtcatatcaacgatagagcagttatagaccatgaatgg
ctcgctaagtataacaaagggttaatgctactctcaggtggtagacacggggatatagga
cgggcattgttgaaaggcaatcagccccaagtcgattcattagttgagttttatcaaact
catttccctgatcgctattatctagaactgctgcgtacaaaccgcccagatgaagaaacc
tatctacacttagccgttgagctcgctgagcaaaaaggcttacctgttgttgcaaccaat
caggttgtttttaatagtcctgaattttttgatgcccacgagatccgagtcgcgatttca
gatggttttactttagccgatcctcgcagaccgaaaaagtatagcaaccagcaatacttc
aaaagcagcgatgagatgcgtgagttatttgaagatattccagaagctatcgaaaatacc
gtcgagatcgccaaacgctgtaatgtcaccgtcaggcttggtgagtacttcttaccagat
tttccgacaggcgaacaatctattgaagacttcttagtcgatgtctctgagaaggggctc
gaagatcgcttggagtttctgtttcccgatcctgctgtgagagctgaaaaacgtcctgag
tatgacaatcgtctcgatatcgaactgaaagtgattaaccagatgggattccctggttac
tttcttatcgtgatggagtttattcaatggggtaaagatcaagacatccctatcgggcct
ggccgtggttccggtgctggctctttagtcgcttatgcactaaagatcaccgatctcgat
ccactcgaatacgaattactgttcgagcgattcctgaatccagaacgtgtctctatgccg
gatttcgatattgatttctgtatggataggcgtgatgaagtgattgatcatgttgccgag
ctttatggccgcgatgcggtttcgcagatcatcacctttggtactatggcggcgaaagca
gttattcgagatgtaggccgagtattaggtcacccttacggcttcgtcgaccgtatttct
aagatggtgcccgccgagccggggatgacactggcgaaagcgttcgaggttgaaccagca
ctgcaggagtcttacgatggcaatgaggaggtaaaagatctcatcgacatgtgtcggatt
ttggaaggtgttactcgtaacgcgggtaagcatgcgggtggcgtggtgatatcgccgacc
acaattaccgattttgctcctatttactgtgactccgaagggaaaaacccggtaacccag
ttcgataaaaatgatgttgagacagcgggcctagtcaagttcgatttcttgggcttgaga
accctaaccatcatcgattgggcactgcagatgatcaaccccaagcagaagaagctgggt
aaagatccgatacgtattgaatcgattcctttagatgacgctaagagttttagactgctt
caacgttatgaaacgactgccgtgtttcagctcgaatcacgcggtatgaaggatttgatt
aaacgccttcagccagatagttttgaagatatgattgcactggtggccctgttccgtccg
ggtccacttcagtccggcatggtagataactttatcgaacgaaagcatggccgagaggct
gtgtcttatcccgacgctgaatatcaacatgactctttacagtgggtattagaacccacc
tacggcattatcctctatcaagagcaggtgatgcagattgctcaggttctagcgggttac
tctcttggtggggcagatatgctgcgccgtgctatgggtaagaaaaagcccgaggagatg
gcaaaacagcgcggcacgttcaaagaaggttcgatcaataacggtatcgacggcgaactg
tcgatgaaaatattcgatctggtggaaaaatttgcgggctacggttttaacaaatcgcat
tcagccgcttacgcactcgtgtcatatcagactctgtggttaaaaacgcattttccggca
gagtttatggcggcagtaatgtctgccgatatggataataccgataaaatcgttatcctc
gttgatgaatgtgaacgcatgcaacagcctctgcttccgccggatgtgaataaaggctta
cttaaatttaatgtcgatgaagaaggccaaattgtttacggtatcggcgccattaaaggt
gtcggtgacggacctgtagattcaattctgcaagcacgaaaagatggcccctttaaagat
ttgtttgatttttgtgcgcgtgtcgacttgaaaaaattgaataaacgcatcatggaaaag
ctgatttatgctggggcattggacagcttagggccccatcgtgcatctatgatggcgaca
ttaccggaagcggtgcgtgcggcggatcaaaatgccaaggctgaggctattggccagcat
gacatgttcggcctattaaatgacgatcaagctgataccaaacagcaatttgttcaatgt
acaccttggccagataaaatttggctcgaaggtgagcgtgaaacattaggcctttatctg
acaggtcacccgataaatcagtatctaaaagagctgaagcattatacttcggggcgccta
aaagatgtccacccgacagaacgtggcaagaccatgaaagcggcaggactggtcatcgcg
acacgtgtcatgatgactaaacgtggatctaaaatggggctggtgaccctggacgataag
agtgcgcgcttggaggtgatgctattcaccgaggcgttcgaaaaatttaaccacctgcta
gagaaagatcgtatcttgattatcgaaggcgaagtcagtttcgatgatttctccggtggc
aaccgcatgactgccagaagcattatcgatatgggcgaggctcgtaatcacttcgccagt
gccgttgaggtggatatcgacagtgacttggtcgatgaaacttggttagatagcttcaaa
caagtggttgagccgtggaataaaggcgcagtgcctattattgttaattatgctcaacct
aaggccaaggctcagtttaaactgggtgataactggagagtcaaccccactgatgagttg
atgcttgcgcttgaaacattgaccggcgctggcaaggttaggatcttattttaa
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