Sinorhizobium fredii USDA 257: USDA257_c00660
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Entry
USDA257_c00660 CDS
T02188
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
USDA257_c00660 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfd03019
]
USDA257_c00660 (deaD)
03009 Ribosome biogenesis [BR:
sfd03009
]
USDA257_c00660 (deaD)
Messenger RNA biogenesis [BR:
sfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
USDA257_c00660 (deaD)
Ribosome biogenesis [BR:
sfd03009
]
Prokaryotic type
rRNA helicases
USDA257_c00660 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AFL48670
UniProt:
I3WYG4
LinkDB
All DBs
Position
complement(70467..72368)
Genome browser
AA seq
633 aa
AA seq
DB search
MTEFEGIAPSIAEALAKRGYTTLTPVQEAMLDPALDGADALVSAQTGSGKTVAFGLALGP
TLLGPARQFDAPGVPLALVIAPTRELALQVKRELEWLYEITGATIASCVGGMDIRSERRA
LERGAHIVVGTPGRLCDHIRRDSLDTSALRAVVLDEADEMLDLGFREDLEFILEASPAER
RTLMFSATVPRSIATLAKSYQRDAVRIGVASEQKQHGDIDYRSLLVAPSDRENAIINVLR
YYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLELVIHADLPNNSETLLHRSGRTGRAGQKGVSALIVPVNQRRKAERLL
DGARITATWAKPPSADEVTRRDEERLIADPTFDEPPRDDEQAIVHALIERHGAEKLAAAF
LRQFRAGRSAPEDLADIPLGGDRGKTRRDGPVAPRDEIDAPRADFTDGQWVSLSVGRKQN
AEPRWLIPMLCRHGKLTKRDIGAIRMQPEETYVELTAEGAERFLSAIGPNRTLEKGIRVK
TLPGAPDSSQPRQDKPDFAKKRPRPAEAASEHGQRDFKPKRKFEKKPPLTQDAHPEKRDE
KPWSKKQGKPEAKKSGSDFKPKAKRNNAKNRQA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacagagttcgaagggatcgcgccctcgatcgccgaggcgttggcgaaacgcggatac
accaccctgacaccggttcaagaggcgatgctcgatccggcgctcgacggtgccgacgcg
ctggtttcggcacagaccggttccggcaagaccgttgccttcggtctggccctcgggccg
acgctgctcggccctgcaaggcaattcgacgcccctggcgtgccgctggcgcttgtcatt
gcgccgacgcgcgaactggcgctgcaggtcaagcgcgagctcgaatggctctatgagatc
acaggggcaacgatcgcgtcctgcgtcggcggcatggatatccgcagcgagcggcgtgca
ctcgagcgcggcgctcatatcgtcgtcggaacgccgggccggctttgcgatcacatccgc
cgcgactcgctcgatacctcggcgttgcgcgcggtggtgctggacgaagcggacgagatg
ctcgatctcggcttccgcgaggatctggaattcatcctcgaggcgtcgccggccgaacga
cgtacgctgatgttctcggcgaccgtgccgcgctcgattgcgacgcttgccaagagctac
cagcgcgacgccgtccgcatcggggtcgcctccgaacagaagcagcacggcgacatcgac
taccggtccctcctcgtcgctccgagcgaccgggaaaacgccatcatcaacgtgcttcgc
tattacgaggcccgcaatgcgatcgtcttctgctcgacccgcgccgcggtgaaccacctg
acggcccgcttcaacaatcgcggtttctcggtcgtggcgctttcgggcgaactcagccag
aacgagcgcactcacgcgctccaggcgatgcgcgacggccgcgcccgcgtctgcattgcg
accgatgtggcggcacgcggcatcgatctgccgggcctcgaactcgtcatccatgccgac
ctgccaaacaattcggagaccctgctgcatcgcagcggccgcaccggccgcgccggccag
aagggcgtcagcgcgctgatcgtaccggtcaaccagcgacgcaaggcggagcgactgctg
gatggcgctcgcatcactgcgacctgggcaaagccgccgtcggcggacgaagtaacgcgc
cgcgacgaggagcgcctcatcgccgatccgactttcgatgaaccaccgcgcgacgacgaa
caggcgatcgtgcatgcgctgatcgagcgccatggtgcagagaagcttgccgccgccttc
ctgcggcagtttcgcgctggccgctcggcgccagaggacctggcggacatcccgctgggc
ggcgatcgtggcaagacccggcgcgacggaccggtcgcgccgcgcgacgagatcgacgcg
ccgcgtgcggacttcaccgacggccaatgggtttcgctctcggtcgggcgcaagcagaat
gccgagccccgctggctgatcccgatgctctgccgccatggcaagctcacgaagcgcgat
atcggcgcgatccgcatgcagcccgaggaaacctatgtcgaactgacggccgaaggcgcc
gagcgtttcctctcggcgatcggcccgaaccggacgctggaaaagggcatccgcgtcaag
acgctgccgggtgcaccggatagctcgcagccgcgacaggacaagccagacttcgcgaag
aagcggccgcggccggccgaggccgcgtcggagcatggccaaagagacttcaaaccgaag
cgcaagttcgaaaagaagcctcccctcacgcaggacgcgcatccggagaagcgggacgaa
aagccctggagcaagaagcagggcaagcctgaggcaaagaagtcgggcagcgacttcaag
ccgaaagccaagcgcaacaacgccaagaaccggcaggcctga
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