Sinorhizobium fredii USDA 257: USDA257_c33820
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Entry
USDA257_c33820 CDS
T02188
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
USDA257_c33820 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfd03021
]
USDA257_c33820 (rpoB)
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c33820 (rpoB)
Enzymes [BR:
sfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
USDA257_c33820 (rpoB)
Transcription machinery [BR:
sfd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
USDA257_c33820 (rpoB)
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
USDA257_c33820 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
hSac2
Motif
Other DBs
NCBI-ProteinID:
AFL51942
UniProt:
I3X7T6
LinkDB
All DBs
Position
3556097..3560239
Genome browser
AA seq
1380 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPAGGRPDEGLQAVFK
SVFPIKDFSGASMLEFVSYEFEPPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SVKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYQR
DGEGWRVPFQPDALKGQKTLADMIDADTGEVVVETGKKLTPRLLRQLQDKGLKALKATDD
DLYGNYLAEDVVNIETGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINVGAYIRNT
LSADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFFDAERYDLSAVGRVKMNMRLD
LDVPDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGNVTSDVVYLSAMEEAKYHVAQANSVLNDDGSFAEEFVVCRHAGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMESVVAR
DSGAAIAARRGGVVDQVDATRIVVRATEDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLV
TVGDLVNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYARLIDMLRGHVAVAGPKGFKKGTELSNAVISEYPRSQWW
MFAIEDEKAQGEIEALRAQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLG
WACAGMGKKIGAMLDAYKAGSDIQPLRDTIDSVIGSGPKGEPIKQYDDESIVRLAEQTRR
GVSIATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGDQFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVDDVGTAAQLPDAAE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgttcaacggtcgtaggcgcgtacgcaagttttttggaaagatc
cccgaagtcgcagagatgccgaacctcatcgaggttcagaaggcgtcctacgaccagttc
ctcatggtggaagagcccgcaggcggacgccccgacgagggacttcaagctgttttcaaa
tcggtatttccgatcaaggatttctcgggcgcctcgatgctcgaattcgtttcctacgaa
ttcgaaccgccgaagttcgacgtcgaagaatgccgccagcgcgacctgacctatgcggcg
ccgctcaaggtgacgctgcggctgatcgtgttcgatatcgacgaggacaccggcgccaag
tcggtcaaggacatcaaggaacagaacgtctacatgggcgacatgccgctcatgacggac
aatggtaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgttcg
ccgggcgtcttcttcgaccatgacaagggcaagagccactcttccggcaagctgcttttc
gccgcgcgcgtcattccgtatcgcggttcgtggctcgacatcgagttcgacgccaaggac
atcgtgcatgcgcgtatcgaccgtcgccgcaagattccggtgacgtcgctcctgatggcg
ctcggcatggatggagaggaaatcctcgacacgttctacacgaagtcgctctaccagcgt
gacggcgagggctggcgcgtgccgttccagccggatgcgctgaagggtcagaagacgctc
gccgacatgatcgacgccgacaccggcgaagttgtcgtcgagaccggcaagaagctgacg
ccgcgcctgctgcggcagttgcaggacaagggcctgaaggcgctcaaggcgaccgacgac
gacctctacggcaactacctcgccgaggacgtcgtcaacatcgaaaccggcgaaatctac
ctggaagccggcgacgagatcgacgagaagacgcttcccgtcatcctgtcggccggcttc
gacgagatcccggttctcgacatcgaccatatcaatgtcggtgcctacatccgcaacacg
ctttctgccgacaagaatgagaaccggcaggatgcgctgttcgacatctatcgcgtcatg
cgccccggcgagccgccgaccatggattcggccgaagccatgttcaacgcgctgttcttt
gacgccgagcgctacgacctctcggccgtcggccgcgtgaagatgaacatgcgcctcgac
ctcgacgtgccggacaccgtccgcacgctgcgcaaggaagatatcctggcggtcgtcaag
atgctggtcgagctgcgcgacggcaagggcgagatcgacgacatcgacaatctcggcaac
cgccgcgtccgctcggtcggcgagttgatggagaatcagtaccgtctgggcctcctgcgc
atggagcgcgcgatcaaggaacgcatgtcctcgatcgagatcgacaccgtcatgccgcag
gatctgatcaacgcgaagccggcagctgctgccgttcgcgagttcttcggctcctcgcag
ctttcgcagttcatggaccaggtgaacccgctctcggaaatcacccacaagcgccgcctt
tcggctcttggcccgggtggtttgacccgcgagcgcgccggcttcgaagtgcgcgacgtg
catccgacccattacggccgcatctgcccgatcgaaacgccggaaggtccgaacatcggt
ctgatcaactcgcttgcgacctttgcccgcgtcaacaagtacggcttcatcgagagcccg
tatcgcaagatcgtcgacggcaatgtgacgagcgacgtcgtctatctttcggcgatggag
gaagcgaagtaccacgtcgctcaggccaactcggtgctgaacgatgacgggtccttcgct
gaagagttcgtcgtctgccgtcatgccggcgaagttatgctggcaccgcgcgacaacatc
aacctgatggacgtttcgccgaagcagctcgtttcggtcgccgcggcgctcatcccgttc
ctcgagaacgacgacgccaaccgagcgctgatgggctcgaacatgcagcgtcaggctgtg
ccgctgctgagagccgaggctccgttcgtcggcaccggtatggaatcggtggttgcgcgc
gactccggcgcggcgattgccgcccgccgtggcggcgtcgtcgaccaggtcgatgcgacg
cgtatcgttgtccgcgctaccgaagacctcgatccgtcgaagtccggcgtcgatatctac
cgtctgcagaagttccagcgctccaaccagaatacctgcgtcaaccagcgcccgctggtc
accgtcggtgacttggtgaacaagggcgacatcatcgcggacggtccgtcgaccgatctc
ggtgacctggctctcggccgcaacgcgctcgtcgcgttcatgccgtggaacggctacaac
tacgaagactcgatcctgctttccgagcggatcgtgcgcgatgacgtcttcacctcgatc
catatcgaggaattcgaagtgatggcacgcgacaccaagctcggtccggaagaaatcacg
cgcgacattccgaacgtatcggaagaagcgctgaagaacctggacgaagccggtatcgtc
tacatcggcgccgaagttcagccgggggacatcctggtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagctgctgcgcgccatcttcggcgaaaaggcgtcg
gacgtgcgtgatacgtccatgcgcatgccgcccggcaccttcggtacgatcgtcgaagtt
cgtgtcttcaaccgccacggtgtggagaaggacgagcgtgcgatggcgatcgaacgcgag
gagatcgaacgcctcgccaaggaccgcgacgacgagcaggcgatcctcgaccgcaacgtc
tatgcgcgcctcattgatatgttgcgcggtcatgttgccgttgccgggccgaagggcttc
aagaagggaaccgaactgtcgaatgcggtgatcagtgaatatccgcgctcgcagtggtgg
atgttcgccatcgaggacgaaaaggctcagggcgagatcgaagcgcttcgcgcccagtac
gacgagtccaagtcgcgcctcgaacagcgctttatggacaaggtcgagaaggtccagcgt
ggcgacgaaatgcctccgggcgtcatgaagatggtcaaggtcttcgtcgccgtgaagcgc
aagatccagccgggtgacaagatggccggccgtcacggcaacaagggcgtcgtgtcgcgg
atcgtgccgatcgaagacatgccgttcctcgaagatggcacgcatgtcgacgtggtgctg
aacccgctcggcgtgccgtcgcgcatgaacgtcggtcagatccttgagacgcatctcggc
tgggcttgcgccggaatgggcaagaagatcggcgcgatgctcgatgcctataaggccgga
tctgacatccagccgctgcgcgacaccattgacagcgtcatcggatccggtccgaagggc
gagccgatcaagcagtacgacgatgaatcgatcgtgcggctggccgagcagacccgccgc
ggcgtctctatcgcaacgcccgtcttcgacggcgctgtcgaggcggacgtcaacgagatg
cttgagcaggcaggtctgaaggtaacgggtcagtcgacgctttatgatggccgtaccggc
gatcagttcgaccgtcaggtgaccgttggctacatctacatgctgaagctcaaccacctg
gtcgacgacaagatccacgcccgttcgatcggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaggtctgggcgctc
gaagcctacggcgccgcctacacgctgcaggaaatgctgacggtcaagtcggacgacgtg
gccggccgcaccaaggtctacgaggcgatcgtccgtggcgacgatacgtttgaggcgggc
attccggagagcttcaacgttctcgtcaaggaaatgcgctcgctcggcctctccgtcgag
ctggagaactcgaaggtcgacgatgtcggcacggcggcgcagctgccggacgcggcggag
taa
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integrated database retrieval system
