Sinorhizobium fredii USDA 257: USDA257_c60840
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Entry
USDA257_c60840 CDS
T02188
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
USDA257_c60840 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfd03019
]
USDA257_c60840 (pnp)
03016 Transfer RNA biogenesis [BR:
sfd03016
]
USDA257_c60840 (pnp)
Enzymes [BR:
sfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
USDA257_c60840 (pnp)
Messenger RNA biogenesis [BR:
sfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
USDA257_c60840 (pnp)
Transfer RNA biogenesis [BR:
sfd03016
]
Prokaryotic type
tRNA degradation factors
USDA257_c60840 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AFL54585
UniProt:
I3XFC9
LinkDB
All DBs
Position
6346220..6348373
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AA seq
717 aa
AA seq
DB search
MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQH
DLENNPDVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMEESSLDLVVA
GTQEAVLMVESEAKELPEDVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPREFDPEDHSA
LENAMLSIAEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGIENPAHSAEEIASVFK
HLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT
GEDEQYVDSLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEA
EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEDRFAVL
SDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMA
KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIA
SSSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASER
VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVVAEKSDKKDGGEAAE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagacccacaaggtagaaatcgaatgggctgggcgtccgctcaagctcgaaacc
ggcaagatcgcccgtcaagccgacggcgccgttctcgccacttacggcgaaaccgtcgtg
ctcgccacggtggtttccgccaaggcaccgaagcccggtcaggatttcttcccgctgacc
gtcaactatcaggaaaagacctatgccgccggcaagatccccggcggctatttcaagcgt
gaaggccgcccaagcgagaacgagacgctcgtctcgcgcctgatcgaccggccgatccgc
ccgctcttccccgagggctacaagaacgacacccaggtgatcatcacggtcatgcagcat
gacctggaaaacaacccggacgtcgtctcgatggtcgcagcctccgcggcgctgaccctc
tccggcattcccttcatgggcccgatcggcggagcccgcgtcggctacatcaacggcgaa
tacgtgctcaacccgcacctcgacgaaatggaagaatcctcgctggatctcgtcgtcgcc
ggcacgcaggaagccgtgctgatggtcgaatccgaggccaaggagttgccggaagacgtc
atgctcggcgccgtcgttttcggccagaagggcttccagccggtgatcgacgcgatcatc
aagctcgccgaagttgccgccaaggagccgcgcgagttcgatccggaagaccactccgct
cttgaaaatgccatgctgtcgatcgccgaagacgagctgcgcaacgcctacaagatcacc
gagaaggctgcccgctacgccgccgtcgacgccgtcaaggcgaaggtcaaggaacatttt
ctgccggaaggcatcgagaacccggcccattcggccgaggaaatcgcctctgtcttcaag
cacctgcaggccaagatcgttcgctggaacatcctcgacaccaagagccgcatcgacggc
cgcgatctcgaaaccgtacgtccgatcgtctcggaagtcggtcttctgccgcgtacccac
ggctcggcgctcttcacccgcggtgaaacccaggcgatcgtcgttgccacgctcggcacc
ggcgaagacgaacagtatgtcgacagcctgaccggcatgtacaaagaacgcttcatgctg
cactacaacttcccgcccttctcggtcggtgaaaccggtcgcatgggctccccgggccgc
cgcgaaatcggtcacggcaagctcgcctggcgcgctatccgcccgatgctgccggaagcc
gagcagttcccctacacgctgcgcgtcgtttccgagatcaccgaatccaacggctcgtcg
tcgatggcgacggtctgcggcacctcgctggcgctgatggatgcgggcgttccgctcgcc
aagccggtcgccggtatcgccatgggtctcatcaaggaagaggaccgcttcgccgtcctc
tccgacatcctcggtgacgaagatcatctcggcgacatggacttcaaggttgccggtacc
gaagccggcatcacctcgctgcagatggacatcaagatcgagggcatcaccgaagagatc
atgggtgttgcgctcaaccaggccaagggcggccgcctgcacatcctcggcgaaatggcc
aaggccatctccgagagccgcggccagctcggcgagtttgcgccgcgcatcgaggtcatg
aacattccggtcgacaagatccgcgaagtcatcggctcaggcggcaaggtcatccgcgaa
atcgtcgagaagaccggcgccaagatcaacatcgaagacgacggcaccgtcaagatcgcg
tcctcgtccggcaaggagatcgaagccgcccgcaagtggatccactcgatcgtcgctgag
ccggaagtcggccagatctacgaaggcacggtcgtcaagaccgccgatttcggcgccttc
gtcaatttcttcggcgcccgcgacggcctcgtccacatttcgcagctcgcctccgagcgc
gtcgccaagaccaccgacgtcgtcaaggaaggcgacaaggtctgggtcaagctgatgggc
ttcgacgagcgcggcaaggtccgcctctccatgaaggtcgtcgaccaggcgaccggcaag
gaggtcgtcgccgaaaagtccgataagaaggacggcggcgaagcggccgaataa
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