Sinorhizobium fredii HH103: SFHH103_01067
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Entry
SFHH103_01067 CDS
T01731
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SFHH103_01067 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfh03021
]
SFHH103_01067 (rpoB)
03400 DNA repair and recombination proteins [BR:
sfh03400
]
SFHH103_01067 (rpoB)
Enzymes [BR:
sfh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SFHH103_01067 (rpoB)
Transcription machinery [BR:
sfh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SFHH103_01067 (rpoB)
DNA repair and recombination proteins [BR:
sfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SFHH103_01067 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
CCE95566
UniProt:
G9A4S2
LinkDB
All DBs
Position
1155324..1159466
Genome browser
AA seq
1380 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPAGGRPDEGLQAVFK
SVFPIKDFSGASMLEFVSYEFEPPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILSTFYTQSLYQR
DGDGWRVPFQPDALKGQKAIAEMIDADTGEVVVEAGKKLTPRLLRTLQEKGVKALKSTDD
ELYGNYLAEDVVNYETGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINVGAYIRNT
LAADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFFDAERYDLSAVGRVKMNMRLD
LDVADTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGNVTSDVVYLSAMEEAKYHVAQANSVLNDDGSFAEEFVVCRHAGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMESVVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLV
TVGDLVNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYARLVDMLRGHVAVAGPKGFKKGTELSNAVISEYPRSQWW
MFAVEDEKAQGEIEALRAQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLG
WACAGMGKKIGAMLDAYHESGDIKPLRTTIDDVIGSGPKGEPIKQYDDESIVRLAEQTRR
GVSIATPVFDGAVEADVNEMLEKAGLKVTGQSTLYDGRTGDAFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVEDLGTTAQLPDAAE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgttcaacggtcgtaggcgcgtacgcaagttttttggtaagatc
cccgaagtcgcagagatgcccaacctcatcgaggtccagaaggcgtcctacgaccagttc
ctcatggtggaagagcccgcaggcgggcgccccgacgagggacttcaagctgttttcaag
tcggtatttccgatcaaggatttttcgggcgcttcgatgctcgaattcgtgtcctacgaa
ttcgaaccgccgaagttcgacgtcgaagaatgccgtcagcgcgacctgacctatgcggcg
ccgctcaaggtgacgctgcggctgatcgtgttcgatattgacgaggacaccggcgccaag
tcgatcaaggacatcaaggaacagaacgtctacatgggcgacatgccgctcatgacggac
aacggtaccttcatcgtcaacggcaccgagcgcgtcatcgtttcgcagatgcaccgttcg
ccgggcgttttcttcgaccatgacaagggcaagagccattcgtccggcaagctgctcttc
gccgcgcgcgtcattccgtatcgcggttcgtggctcgacatcgagttcgacgccaaggac
atcgtgcacgcccgtatcgaccgtcgccgcaagattccggtgacgtcgctcttgatggcg
ctcggcatggacggcgaggagatcctcagcaccttctacacgcagtcgctctatcagcgc
gacggcgatggctggcgcgtgccgttccagccggatgccctgaagggccagaaggcgatt
gccgagatgatcgatgccgacaccggcgaagtcgtcgtcgaggccggcaagaagctgacg
ccgcgcctcctgcggacgctgcaggaaaagggcgtgaaggcgctcaagtcgaccgatgac
gagctctatggcaactacctggctgaggacgtcgtcaactacgaaaccggcgaaatctac
ttggaagccggtgacgagatcgacgagaagacgcttccggtcattctgtcggccggtttc
gacgagatcccggttctcgacatcgaccacatcaatgtgggcgcctatatccgcaatacg
ctcgctgccgacaagaacgagaaccggcaggatgcgctgttcgacatctatcgcgtcatg
cgcccgggcgagccgccgaccatggattccgccgaagccatgttcaacgcgctgttcttc
gatgcggagcgctacgacctctcggccgtcggccgcgtgaagatgaacatgcgtctcgac
ctcgacgtggcggacacggtccgcacgctccgcaaggaagacatcctggcggtcgtcaag
atgctggtcgaactgcgtgacggcaagggcgagatcgacgatatcgacaacctcggcaac
cgccgcgtccgctcggtcggcgagttgatggagaaccagtaccgtctcggcctcctgcgc
atggagcgcgcgatcaaggaacgcatgtcctcgatcgagatcgacaccgtgatgccgcag
gacctgatcaacgcgaagccggccgctgctgccgttcgcgaattcttcggctcctcgcag
ctctcgcagttcatggaccaggtgaacccgctgtcggaaatcacccacaagcgccgcctt
tcggctcttggcccgggtggtctgactcgcgagcgcgccggcttcgaagtccgcgacgtg
catccgactcactacggccgtatctgcccgatcgaaacgccggaaggtccgaacatcggt
ctgatcaactcgctcgcgaccttcgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccggaagatcgtcgacgggaacgtgacgagcgacgtcgtctatctgtcggcgatggaa
gaggcgaagtatcacgtcgctcaggccaactcggtgttgaacgatgatggctcctttgcc
gaagaattcgtcgtctgccgtcatgccggcgaagttatgctggcaccgcgcgacaacatc
aacctgatggacgtttcgccgaagcagctcgtttcggtcgccgcggcgctcatcccgttc
ctcgagaacgatgacgccaaccgcgcgctgatgggctcgaacatgcagcgccaggccgtg
ccgctgctgagagccgaggctccgttcgtcggcaccggtatggaatcggtggtcgcgcgt
gactcgggtgcagcgattgccgcccgccgtggcggcgtcgtcgaccaggtcgatgcgacg
cgtatcgttatccgcgccaccgaagacctcgatccgtcgaagtcgggcgtcgatatctac
cgtctgcagaagttccagcgctccaaccagaacacctgcgtcaaccagcgcccgctggtc
accgtcggtgacctggtgaacaagggcgacatcatcgccgacggtccgtcgaccgatctc
ggtgacttggcgctcggccgcaacgcgctcgtcgcgttcatgccgtggaatggctacaac
tacgaagactcgatcctgctttccgagcggatcgtgcgcgatgacgtcttcacctcgatc
catatcgaggaattcgaagtgatggcacgcgacaccaagctcggtccggaagaaatcacg
cgcgacattccgaacgtatcggaagaagcactgaagaacctggacgaagccggtatcgtc
tacatcggcgcagaagttcagccgggcgacattctggtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagctgctgcgcgccatcttcggcgaaaaggcttcg
gatgtccgcgatacgtcgatgcgcatgccgcccggcaccttcggtaccatcgtcgaagtt
cgcgtcttcaaccgccacggcgtggagaaggacgagcgtgcgatggcgatcgaacgcgag
gagatcgaacgcctcgccaaggaccgcgacgacgagcaggcgatcctcgatcgcaacgtc
tatgcgcgcctggtcgacatgcttcgcggccacgtcgccgttgccggcccgaagggcttc
aagaagggcaccgagctttcgaacgccgtcatcagtgagtatccgcgctcgcagtggtgg
atgttcgccgtcgaggacgagaaggcccagggcgagatcgaagcgctccgcgcccagtac
gacgaatccaagtcgcgtctcgaacagcgcttcatggacaaggtcgagaaggtccagcgc
ggcgacgagatgcctccgggcgtcatgaagatggtcaaggtcttcgtcgccgtgaagcgc
aagatccagccgggcgacaagatggccggccgtcacggcaacaagggtgtcgtgtcgcgg
atcgtgccgatcgaggacatgccgttcctcgaagacggcacgcatgtcgacgtcgtgctg
aacccgctcggcgttccgtcgcgcatgaacgtcggccagattctcgagacgcatctcggc
tgggcttgcgccggcatgggcaagaagatcggtgcgatgcttgacgcataccacgaaagt
ggagacatcaagccgctccgcaccacgatcgatgacgtcatcggatcgggcccgaagggc
gagccgatcaagcagtacgacgacgaatcgatcgtgcggctggccgagcagacccgccgc
ggcgtgtcgatcgcaacgccggtcttcgacggcgcggtcgaggccgacgttaacgagatg
ctggagaaggccggtctgaaggtgacgggtcagtcgacgctctatgatgggcgaaccggc
gatgcgttcgaccggcaggtgaccgttggctacatctatatgctgaagctcaaccacctg
gtcgacgacaagatccacgcccgttcgatcggtccgtactcgctcgttacccagcagccg
ctgggcggaaaggcgcagttcggcggccagcgcttcggcgaaatggaggtctgggcgctc
gaggcttacggcgccgcctacacgctgcaggaaatgctgacggtcaagtcggacgacgtg
gccggccgcaccaaggtctacgaggcgatcgtccgtggcgacgacacgttcgaggcgggc
attccggagagcttcaacgttctcgtcaaggaaatgcgctcgctcggcctctccgtcgag
ttggaaaactcgaaggtcgaggacctcggcaccacggcgcagctgccggacgcggcggag
taa
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