Streptomyces ficellus: EIZ62_13120
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Entry
EIZ62_13120 CDS
T06929
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfic
Streptomyces ficellus
Pathway
sfic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EIZ62_13120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfic03021
]
EIZ62_13120
03400 DNA repair and recombination proteins [BR:
sfic03400
]
EIZ62_13120
Enzymes [BR:
sfic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EIZ62_13120
Transcription machinery [BR:
sfic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EIZ62_13120
DNA repair and recombination proteins [BR:
sfic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EIZ62_13120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QGV79092
UniProt:
A0A6I6FGB6
LinkDB
All DBs
Position
complement(2993139..2997038)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVSVERQQIENRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAEKLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVRGE
GRAFNSTAEAIMAFDARELSLQAKVDIRFPIGTVPPRGWTPPVAEEGEPEWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFYWAT
RSGVTVAISDVVVPEAKKEIVKSYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNDNFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLRIAAKD
AAGVLRKAEDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVNAGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKIVVTPDDGSDETAFPISKRAKV
LVHEGDHVEVGQKLTAGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFESENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggccaccgcggacgacatc
cgtcagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcggtgtggcgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgccccc
gtcacccacatctggtacttcaagggcgtcccgtcccgcctgggctacctgctggacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gaggagcgccgcacccgcgacctgccctcgctggaggcccacgtctccgtcgagcgccag
cagatcgagaaccgccgcgacgccgacctcgaggcccgcgccaagaagctcgagaccgac
ctggccgagctcgaggccgagggcgccaaggctgacgtgcgccgcaaggtgcgcgagggc
gccgagcgcgagatgaagcagctgcgcgaccgcgcccagcgcgagatcgaccgtctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttcgacggctcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagaagctccgcgagatc
atccggaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctggactgtgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccggaacaaccgtctcaagcgtctccttgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgcccggtcaccggtcccggcaaccgcccgctgaag
tccctcagcgacatgctgaagggcaagcagggccgcttccgtcagaacctgctcggcaag
cgagtcgactactcggcgcgttccgtcatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
accgtggtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtcccgtcaccatgccgacccaggac
atggtgctgggcctcttcttcctcaccacggacgaggaggagcgcgaggtgcgcggcgag
ggccgtgcgttcaactccaccgccgaggcgatcatggccttcgacgcccgggagctgtcg
ctccaggcgaaggtcgacatccgcttcccgatcggcaccgtcccgccccggggctggact
ccgccggtcgccgaagagggtgagcccgagtggcagcagggtgactcgttccgtctgcgg
acgaccctgggccgtgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtcggcaagaagcagctctccgagatcgtcaacgacctcgccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttctactgggcgacc
cgttccggtgtcaccgtcgccatctccgacgtcgtcgttcccgaggcgaagaaggagatc
gtcaagtcgtacgaggctcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgacaacttcccgaagaccaacccgatcttcatgatggtgaactcg
ggtgcacgaggcaacatgatgcagatgcgtcagatcgccggtatgcgtggtcttgtgtcg
aacgccaagaacgagacgatcccgcgtcccatcaaggcgtccttccgtgagggcctgtcg
gtgctggagtacttcatctccacgcacggtgcccgtaagggtctcgccgacaccgccctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtgatc
atccgcgaggaggactgcggcaccgagcgcggtctgaagctgcggatcgcggccaaggac
gccgcgggcgtgctccgcaaggcggaggacgtcgagacgtccgtgtacgcgcggatgctc
gccgaggacgtcgtcgtcgacggcaaggtcatcgcgccggccaacgtcgacctgggtgac
gtgctcatcgacgccctggtcaacgcgggcgtcgaggaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggccgttcgctcgccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacgcagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgtgtcgtcgagctcttcgaggctcgtacgccgaagggtgtcgccccg
atctccgaggcctccggccgcgtgcggatcgaggagaccgagaagaccaagaagatcgtc
gtcaccccggacgacggcagcgacgagacggccttcccgatctcgaagcgcgccaaggtc
ctggtgcacgagggcgaccacgtcgaggtgggccagaagctcaccgcgggtgcaaccaac
ccgcacgacgtgctgcgcatcctcggccagcgtgccgtccaggtccacctggtcggcgag
gtccagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcggagctgcttccg
ggcgagctggtcgagcggtcgaagttcgagtcggagaaccgtcgtgtggtcaccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcgtcgctggcgacg
gagtcgtggctgtccgcggcctccttccaggagacgaccagggtcctgacggacgcggcg
atcaacgccaagtccgactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctgtcccgctaccgcaacatccgggtcgagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
accggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtaa
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