Scleropages formosus (Asian bonytongue): 108918765
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Entry
108918765 CDS
T04919
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108918765
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108918765
09142 Cell motility
04820 Cytoskeleton in muscle cells
108918765
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sfm00535
]
108918765
Proteoglycans [BR:
sfm00535
]
Extracellular matrix (ECM) proteoglycans
Others
108918765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108918765
NCBI-ProteinID:
XP_018581802
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Position
21:complement(12332039..12355918)
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AA seq
684 aa
AA seq
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MTGPAAALGPLLVLLLHLVLGCAAQRLPPGPRGPPGPPGVPGIDGIDGERGPSGPDGAPG
LDGDDGKPGSAGLPGEPGADGLTGPIGEPGPRGPRGQKGEPGKAGLRGPPGVGPDGPPGP
VGPAGLPGEVGKVGLTGAMGLRGPPGPPGPPGPRGAAGVHGAGGVLCLNACPPGLSGHPG
LPGMKGHKGVKGEPGEPGKQGHKGAEGDQGDPGEVGAQGPPGPQGLRGIKGIMGSKGEMG
PREQDGEPGPRGVQGAAGDPGQRGVAGETGLKGARGLQGPRGITGLPGANGESGLPGVDG
REGIPGMPATKGLPGKTGAPGDAGPQGLPGLPGAPGPKGISGGKGNTGEPGLTGSMGSSG
KTGERGEKGDVGPVGPRGGPGARGERGPAGPPGKPGPRGAIGDLGLPGLPGPPGLPGAKG
DRGAVGKTGPKGEQGPPGAEGTPGDKGDQGERGEHGPKGATGPPGEPGSRGPEGVRGLAG
VEGPSGAPGPRGMQGDRGVPGFPGPQGPAGKEPSDQQIRQVCMRVMQEQLAQLAASLRRP
ESGLAGLPGRPGPPGPPGNPGDSGFPGQAGARGLPGLKGPPGPIGLKGPKGEVGDRGDRG
PTVRGPKGMPGAPGLPGEPGRPGYGTDGRDGERGPPGIPGIPGIPGPPGPPGLNGYCDPS
ACTLQAAASSQSLKDSNMKGPGGP
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgactggacccgctgctgccctcgggcccctgcttgtgctcctgcttcacctcgtactc
ggctgtgctgctcagcgactcccaccaggaccccgcggaccccccggcccccctggtgtc
cctggaatcgatggcatcgacggggaaagaggtcccagcggcccggacggtgctcctggc
cttgatggagatgatggaaaaccgggctctgcaggactgcccggcgaacccggagccgac
ggtttgactgggcccattggagagcctggtccaaggggtccacggggacaaaaaggagaa
ccggggaaggctgggcttcgtggaccaccaggtgttggacctgatggacctcctggacct
gtgggaccagcaggactaccaggcgaagttggtaaagttggactcacaggagccatggga
ctgagaggccctccaggaccccctggacccccagggcctagaggagctgctggggtccat
ggtgcgggtggagtgctgtgtctcaacgcctgcccccctggcctctcaggccacccaggt
cttccaggtatgaagggccacaagggtgtaaaaggagaacctggtgagccaggcaaacaa
gggcacaagggtgcagagggagaccaaggagaccctggagaagtcggagcacaaggccca
ccaggacctcaagggctcagagggatcaaagggatcatgggttccaaaggagaaatgggg
cctcgtgagcaggatggagagccaggtcctcggggtgtccaaggggcagctggagaccca
ggccagaggggtgtggccggagagacgggtctcaaaggtgctcgggggcttcaagggcca
agaggaatcactggtctcccaggggccaatggcgagagtggactccctggagtggacggg
cgtgaagggattcctgggatgccggccactaagggacttccagggaaaacaggagctcca
ggagacgcgggtcctcagggacttcctggtttaccaggggctccaggtcctaaaggcatc
agtggtgggaagggcaacacaggagagccgggtcttactgggtccatgggctcttctggt
aaaacaggcgagcgcggtgaaaagggagatgtgggacccgttggaccaagaggtggacca
ggtgcaagaggagagcgtggtccagctggtcccccaggaaagccaggtccccgtggagct
attggggacctcggtctgccgggactcccagggcctccaggtctgccaggagcaaaagga
gacagaggggctgttggaaaaactggtccaaaaggggaacaaggacctcctggagctgaa
gggacgcctggtgacaaaggggaccaaggtgagcgaggagagcacggaccaaaaggagca
actggaccccctggggagcctggaagcagaggcccagaaggggtacgtgggcttgctggg
gtcgagggaccatccggcgcaccaggaccacgtggcatgcagggagacaggggtgtcccc
ggatttccaggtccacagggacctgcgggtaaagagccaagtgatcagcagatcagacaa
gtttgcatgagggtcatgcaagagcagttggcccagttggctgccagtcttagaagacct
gagtctggacttgctgggctacctggcagacctggacctcctggaccccctggtaaccct
ggagacagcggcttccctgggcaggcaggtgccagagggctgccaggcctcaaaggtccg
ccaggtcccatagggctgaaaggaccaaaaggtgaagtgggagacaggggagaccgaggt
cccacggtacgaggacccaaaggaatgccgggggcccctggtttacctggggagcctggg
agacctggctatggcacagatgggcgggacggtgagagggggcctcctggtatccctgga
atacctggaatcccagggcctcctggtccccctggcctcaatggctactgcgacccttcg
gcttgtactttgcaggcagcagcttcatctcagtctctgaaggactcaaacatgaaaggg
cctggaggaccatga
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