Scleropages formosus (Asian bonytongue): 108930292
Help
Entry
108930292 CDS
T04919
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108930292 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108930292 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108930292 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfm04147
]
108930292 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108930292 (col6a1)
Exosome [BR:
sfm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108930292 (col6a1)
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108930292 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
108930292 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
Motif
Other DBs
NCBI-GeneID:
108930292
NCBI-ProteinID:
XP_018601002
LinkDB
All DBs
Position
12:complement(29316005..29336236)
Genome browser
AA seq
1011 aa
AA seq
DB search
MLSDSLLQLMMIFSCSFWGESRAQLSRVPRFQECPVDLFFVLDTSESVALRSKPPEFYID
QIKSFTKSFIDELKDIRQPCDRFVTWNSGALHYSDEIVLVRELSDLSTERSALKRDIDTI
SYIGKGTHTDCAIKQGVAELLGGGSHYNENKYIVVVTDGHPVTGYKEPCGGLQEAANEAR
QHGIKVFAVAISPDQEDTRLSVIATDAQYRQNFTAADKEKSVQLKTIHNIINIIRNETKD
VCCSFDCHAKGGPKGPDGDTGSKGETGRQGIPGEKGDIGDMGRPGDPGPPGYQGRKGDSG
PRGEKGERGHKGFKGDKGQRGIDGVDGRKGEPGFPGLTGCKGSPGPDGLQGEPGPKGDPG
PYGSKGTKGEPGRTGEPGRRGDYGPSGSKGAGGPRGANGDKGERGDDGASGPDGPRGERG
APGEKGEQGSRGSRGPKGDAGEPGPRGEAGREGSPGPSGEPGEPGRSGPMGYRGDEGPLG
PEGPKGPRGIKGAPGDRGLMGERGEDGTPGNGTQGCHGFQGYPGPRGDPGEPGSMGTPGP
KGDDGQPGDPGPDNDLSGSPGPKGAKGYRGPEGRPGPPGPPGPEGTDECEILDIIMKMCS
CCECKCGPLDLAFVVDSSESIGANNFEIAKDFIITVIDRLMKDQQVRFGGDDSRIGVVQY
SGENAQEAVRLDDANIRTIPELKQAVKNLRWLAEATYTGEALQFSLTNMISRLKQKNRVV
LVLTDGRSDITRDKVPLSVLCDKGIRVGGLGVMDYSGRVPNQEQLEDVACTNSPENGFTF
VLKNFAELLHDSFLQNLTAQICKDKNCPSYKCPISFGADTDITIMMDSSASVGSRNFETS
RMFVKRLAERFLTAQRTGRATVRVAVAQYSRDATMEADFSSNYTQVSRQIDGVAFRNGAT
DIPAALGFAVERFKRSGNRVKKLLFFSDGRSQSATESDVEKRVRDVQAAGIELYVLTVGD
AVNESTLRSLVSRGRPYDVAYGHRHLFRATDYPSLLRGVFHHTVSRRVSLL
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgctctcggactccctcctccagctcatgatgatcttctcgtgctccttctggggagag
tctcgagcccagctctccagggtgcccaggttccaggaatgtcctgtggacctcttcttt
gttctggacacatctgagagcgtggccttgagatccaaaccccccgagttctacattgac
cagatcaagagcttcaccaagagcttcatcgatgagctgaaagacatacgacagccatgt
gaccggtttgtgacgtggaactcaggtgcgctccactacagtgacgagatcgtactggtg
cgagagctgagtgacctgagcaccgaacggtccgcactgaagagagacatcgacaccatc
tcctacattggcaagggcacccacacagactgcgccatcaagcaaggcgtggcggagctt
ctcgggggaggctcacattacaacgagaacaagtatatcgtagtggtgacagatggccat
ccggtgacgggatacaaggaaccctgcggcgggctgcaggaagctgccaatgaggccaga
cagcacggcatcaaagtgtttgctgtggccatctctcctgatcaggaggacaccaggctc
tcggtcattgccaccgatgcccagtaccgtcagaacttcaccgccgctgacaaggagaag
tctgttcagctgaagaccatccacaacattatcaacatcatcagaaacgaaacgaaggac
gtgtgctgttccttcgattgtcatgccaaaggaggaccaaagggcccagacggggacacc
gggtcgaagggtgagactggcagacagggaataccgggagaaaagggagacattggagac
atgggccgtcctggggatcccgggccacccggttaccagggacggaagggagactcagga
ccacggggagagaagggggagagaggacacaagggattcaagggagacaaaggacagcgc
gggatcgatggggtagacggacgtaagggtgagcctggattcccaggacttactggatgc
aaaggatctccaggaccagatgggttacaaggagaaccaggtcccaagggggaccctgga
ccttacggctcaaaaggcacaaagggggaacctgggcggactggggagccagggagacgg
ggagactacggcccttctgggagcaagggtgcgggaggaccaagaggtgccaatggtgac
aaaggagagcgaggagatgatggagcatcaggaccagacggaccccgcggtgaaagagga
gcgccaggagagaagggcgagcagggatcccgtggaagcagaggaccaaaaggagacgcg
ggcgagcccggtcccaggggtgaggcaggccgcgaaggttcaccggggcccagtggagag
ccgggcgaacccgggcggtctgggccaatgggctaccgcggagacgagggccccctggga
ccagagggaccaaaagggccgagaggaatcaagggcgccccaggggaccgaggactcatg
ggtgaaaggggagaagacgggactccaggaaacgggacgcaaggatgccacggattccaa
ggttaccctggccctagaggagacccaggcgagccgggatcgatgggcactccgggtccc
aaaggagacgacggacagccaggtgaccccgggccagataacgacctgtctgggagtcca
ggccccaaaggagcaaagggctaccgagggcctgagggaaggcctggaccccctggaccc
ccaggcccagaaggcacagatgagtgcgagatcctggatattatcatgaagatgtgctct
tgctgtgagtgcaagtgtggcccactggacttggcctttgttgtggacagctctgagagt
atcggtgcaaacaactttgaaatcgccaaggacttcatcattacagtcattgaccgactg
atgaaggatcagcaagtcaggtttggaggcgacgactcccggatcggggttgtgcagtac
agtggggagaatgcccaggaagccgttcggctggacgatgccaacatcagaaccatccct
gaactgaaacaagcagtgaaaaatctccggtggctcgcagaggctacctacacaggcgag
gccctacagttctccctgactaacatgatcagccgacttaagcagaagaaccgtgtggtc
ctggtcctgacagacggtcgctccgatatcaccagggacaaagtgcctctcagcgtgctg
tgtgacaagggcatccgggtgggtggactgggtgtgatggactacagcggtcgagtgccc
aaccaggagcagctggaggacgtggcgtgcacgaacagcccggagaatggttttactttc
gtgctgaagaactttgctgagctgcttcatgactctttcttgcagaacctcactgcgcag
atctgtaaagataagaactgccccagttacaaatgtccaatttctttcggggccgacacg
gacatcaccatcatgatggacagctccgccagcgtgggcagcaggaactttgagacgagc
aggatgtttgtgaagcgcctcgccgagcgcttcctcacagcgcagcggacaggccgagcg
acggtccgtgtggccgtggcgcagtacagccgcgacgccaccatggaggccgacttctcc
tccaactacactcaggtgtctcgccagatcgatggcgtcgccttccggaacggagccacg
gacatcccggctgccctgggcttcgctgtcgagaggttcaagcgcagcgggaaccgtgtc
aagaagctgctgttcttctcggacggccgctctcagagcgccaccgagagcgacgtcgag
aaacgggtgcgtgacgtgcaggccgccggcatcgagctctacgtgctgaccgtgggcgac
gcggtcaatgagtccacgctgcggtccctggtgagccgcgggcgaccctacgacgtagcc
tacggccaccggcacctgttcagggcaaccgactacccatcactgctgcgtggcgtcttc
caccacaccgtctccaggagggtgtccctcctgtga
DBGET
integrated database retrieval system
