KEGG   Salvelinus fontinalis (brook trout): 129813661
Entry
129813661         CDS       T11136                                 
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1
  KO
K14315  nucleoporin NDC1
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    129813661 (ndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfon03019]
    129813661 (ndc1)
Messenger RNA biogenesis [BR:sfon03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     129813661 (ndc1)
SSDB
Motif
Pfam: Ndc1_Nup
Other DBs
NCBI-GeneID: 129813661
NCBI-ProteinID: XP_055722020
LinkDB
Position
17:complement(7702594..7731923)
AA seq 677 aa
MFSADQSCWFVRKVICWRAVASVAWSVLLLLPTTALFVLLSRFSLFHPILWISECLSLLT
SPSGIFSFILLCGVVVLVGFFNLEYYTVVPSVACSKIALLGQVLHPRQVVHSLVHCIMGV
VVAWCCAFTIGGRYQSLGHPCTQDESSGPEMCLNEYHLVLLLVGAFIGYSHSLVGVVYNM
NYVSFHTMQQYKYLRFKGALPLVVKASTVQALYGLRNFLLLYFFMGYAPRAWICKTLDLN
INRSIHSLDSVSSLLDLSLLYHLWISGTFLLLTWYITVLLFRIFVTEVYSFPVQSTFTEE
AHQCLPKVITGTQPMILKFLALQDLALLSQHSPSRRLEVFSLSQPGGHPHIWTALSKECL
SLLSDLTERLVAHHDTVATNGRAKSQSTGSNKRPTISSESSVSSVGMEDMKTPRPSALIR
TPGSVFLRSSVGAGLRTPLTAPFTPDLDSPFSSPALRRLTGPLDPQGPLSPGFSSIQSPH
VMRRGPKLWSASTDSQLNGSPPPSPGPAPSHAQAQLKPSFLVTFLQNRKDQVKHFLAKRV
LIMYLFNKLPEASSQALFADSQVHIWALQGLSHLVAASFSEDQYGIVQTTLPTILSTLLV
LQEAVDRHFKLPHTSSKPGHCSCSMGDDSYKTLRFALRSTLKTAVYRITATFGGHLHAVQ
MSAEHRKRLQHFLEYKE
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgttttcagcggatcaaagttgttggttcgttcgtaaggtgatttgttggagagcagta
gccagtgtggcgtggtctgtcctactgctgcttcccaccacagctctgtttgtacttctc
agcagattcagtctgtttcaccccatactctggatatcagaatgcctgtccctattgacc
agtcccagtggcatcttctccttcattctgctgtgtggagtggtggtgctggtgggcttc
ttcaacctggagtattacacagttgtcccatccgtcgcctgttccaagatcgccctcctg
ggtcaggtgctccacccccgtcaggtcgtccactcactggtgcactgcatcatgggtgta
gtagtagcttggtgttgtgccttcaccatcggagggcgctaccagtccttggggcacccc
tgtacacaggatgagagtagtggtcctgagatgtgcctgaatgaatatcacctggtgttg
ctgctggtgggggccttcattggctacagccacagcctggtgggagtggtctacaacatg
aactacgtttccttccacaccatgcagcaatacaagtacctccgcttcaagggagctctg
cccctagtggtgaaggccagtactgttcaggctctctacggtctcaggaacttccttctc
ctttatttcttcatgggatatgcaccacgagcctggatctgtaaaacacttgacctcaac
atcaacaggtccatccattccctggacagtgtgtcgagtctattggacttgtccctcctg
taccacctgtggatcagcgggaccttcctcctcctcacctggtacatcacagtactgctc
ttcaggatcttcgttaccgaggtttacagttttcctgtccagtccacgttcacagaggaa
gcccaccagtgcctgcccaaagttatcactggcacgcaaccaatgatactgaagttccta
gccctccaggacctggctctgctgtctcaacattctccttctagacgtctggaggtgttc
agtctcagccaaccaggcggtcaccctcacatctggacggccctgagtaaggagtgtctg
tctctgttgtcagacctgactgagcggctggtagcccaccatgacactgtagctactaac
ggacgggccaagtcccagtctacaggaagcaacaagcggcccaccatctcctcggaaagc
tccgtatcttctgtaggtatggaggatatgaagactcctcggcccagcgccctgatcaga
acccctggctcagtgttcttacgttcctctgtcggggcggggctgcgaactcccctgacc
gccccctttaccccggacctagacagccccttctcctcccccgccctgcggcgcctcact
ggccccctggatcctcaggggcccctgtcccccggcttcagctccatccagagccctcac
gtcatgaggaggggccccaaactctggtctgcttctacagactcccagctgaacggcagt
cctccgccatctcctggtcccgcccccagccacgcccaggcccaactcaaaccctccttc
cttgttaccttcctacagaacaggaaggaccaggttaaacatttcttggcaaagcgggtg
ctgataatgtatctgtttaacaagctgccagaagcctccagtcaggccctgttcgctgac
agccaggttcacatatgggctctgcaaggtctgtctcacctggtggcagcgtccttctct
gaggaccagtatgggatagttcagaccaccctgcctaccatcctcagtaccttgctggtg
ttacaggaggctgtggatcgtcacttcaagctaccccatacctcctctaaaccaggtcac
tgttcctgcagtatgggagatgacagttacaagacgctccgcttcgccctgcgatccacc
ctcaagaccgctgtctacaggatcacagccaccttcggaggacacctccacgctgtccag
atgtccgcagagcacaggaagagactgcagcacttcctggagtataaagagtga

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