Salvelinus fontinalis (brook trout): 129813661
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Entry
129813661 CDS
T11136
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129813661 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129813661 (ndc1)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129813661 (ndc1)
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Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
129813661
NCBI-ProteinID:
XP_055722020
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Position
17:complement(7702594..7731923)
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AA seq
677 aa
AA seq
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MFSADQSCWFVRKVICWRAVASVAWSVLLLLPTTALFVLLSRFSLFHPILWISECLSLLT
SPSGIFSFILLCGVVVLVGFFNLEYYTVVPSVACSKIALLGQVLHPRQVVHSLVHCIMGV
VVAWCCAFTIGGRYQSLGHPCTQDESSGPEMCLNEYHLVLLLVGAFIGYSHSLVGVVYNM
NYVSFHTMQQYKYLRFKGALPLVVKASTVQALYGLRNFLLLYFFMGYAPRAWICKTLDLN
INRSIHSLDSVSSLLDLSLLYHLWISGTFLLLTWYITVLLFRIFVTEVYSFPVQSTFTEE
AHQCLPKVITGTQPMILKFLALQDLALLSQHSPSRRLEVFSLSQPGGHPHIWTALSKECL
SLLSDLTERLVAHHDTVATNGRAKSQSTGSNKRPTISSESSVSSVGMEDMKTPRPSALIR
TPGSVFLRSSVGAGLRTPLTAPFTPDLDSPFSSPALRRLTGPLDPQGPLSPGFSSIQSPH
VMRRGPKLWSASTDSQLNGSPPPSPGPAPSHAQAQLKPSFLVTFLQNRKDQVKHFLAKRV
LIMYLFNKLPEASSQALFADSQVHIWALQGLSHLVAASFSEDQYGIVQTTLPTILSTLLV
LQEAVDRHFKLPHTSSKPGHCSCSMGDDSYKTLRFALRSTLKTAVYRITATFGGHLHAVQ
MSAEHRKRLQHFLEYKE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagcggatcaaagttgttggttcgttcgtaaggtgatttgttggagagcagta
gccagtgtggcgtggtctgtcctactgctgcttcccaccacagctctgtttgtacttctc
agcagattcagtctgtttcaccccatactctggatatcagaatgcctgtccctattgacc
agtcccagtggcatcttctccttcattctgctgtgtggagtggtggtgctggtgggcttc
ttcaacctggagtattacacagttgtcccatccgtcgcctgttccaagatcgccctcctg
ggtcaggtgctccacccccgtcaggtcgtccactcactggtgcactgcatcatgggtgta
gtagtagcttggtgttgtgccttcaccatcggagggcgctaccagtccttggggcacccc
tgtacacaggatgagagtagtggtcctgagatgtgcctgaatgaatatcacctggtgttg
ctgctggtgggggccttcattggctacagccacagcctggtgggagtggtctacaacatg
aactacgtttccttccacaccatgcagcaatacaagtacctccgcttcaagggagctctg
cccctagtggtgaaggccagtactgttcaggctctctacggtctcaggaacttccttctc
ctttatttcttcatgggatatgcaccacgagcctggatctgtaaaacacttgacctcaac
atcaacaggtccatccattccctggacagtgtgtcgagtctattggacttgtccctcctg
taccacctgtggatcagcgggaccttcctcctcctcacctggtacatcacagtactgctc
ttcaggatcttcgttaccgaggtttacagttttcctgtccagtccacgttcacagaggaa
gcccaccagtgcctgcccaaagttatcactggcacgcaaccaatgatactgaagttccta
gccctccaggacctggctctgctgtctcaacattctccttctagacgtctggaggtgttc
agtctcagccaaccaggcggtcaccctcacatctggacggccctgagtaaggagtgtctg
tctctgttgtcagacctgactgagcggctggtagcccaccatgacactgtagctactaac
ggacgggccaagtcccagtctacaggaagcaacaagcggcccaccatctcctcggaaagc
tccgtatcttctgtaggtatggaggatatgaagactcctcggcccagcgccctgatcaga
acccctggctcagtgttcttacgttcctctgtcggggcggggctgcgaactcccctgacc
gccccctttaccccggacctagacagccccttctcctcccccgccctgcggcgcctcact
ggccccctggatcctcaggggcccctgtcccccggcttcagctccatccagagccctcac
gtcatgaggaggggccccaaactctggtctgcttctacagactcccagctgaacggcagt
cctccgccatctcctggtcccgcccccagccacgcccaggcccaactcaaaccctccttc
cttgttaccttcctacagaacaggaaggaccaggttaaacatttcttggcaaagcgggtg
ctgataatgtatctgtttaacaagctgccagaagcctccagtcaggccctgttcgctgac
agccaggttcacatatgggctctgcaaggtctgtctcacctggtggcagcgtccttctct
gaggaccagtatgggatagttcagaccaccctgcctaccatcctcagtaccttgctggtg
ttacaggaggctgtggatcgtcacttcaagctaccccatacctcctctaaaccaggtcac
tgttcctgcagtatgggagatgacagttacaagacgctccgcttcgccctgcgatccacc
ctcaagaccgctgtctacaggatcacagccaccttcggaggacacctccacgctgtccag
atgtccgcagagcacaggaagagactgcagcacttcctggagtataaagagtga
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