KEGG   Salvelinus fontinalis (brook trout): 129814938
Entry
129814938         CDS       T11136                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    129814938
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:sfon03000]
    129814938
   04121 Ubiquitin system [BR:sfon04121]
    129814938
   03036 Chromosome and associated proteins [BR:sfon03036]
    129814938
Enzymes [BR:sfon01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     129814938
Transcription factors [BR:sfon03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    129814938
Ubiquitin system [BR:sfon04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     129814938
Chromosome and associated proteins [BR:sfon03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    129814938
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     129814938
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like DUF7885 F-box JmjC Cupin_8 LRR_4 LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 129814938
NCBI-ProteinID: XP_055724085
LinkDB
Position
2:23672599..23723891
AA seq 1382 aa
MEAGADSGRKLRSICRTMYDENEDFSDVEEIANVRGFNLEEKLVSNSYNRHFVQLMDGKD
FTYEYVQREALQTPLIFKAKDGLGLRMPDPEFTVSEIKGLVGSRRAVDVMDVSTQKGSEM
SMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLVKRPTVVDLVDWVDNMWPLKLKQRQ
TEATNVISEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVFWLVPPTPHNL
ALYEDWVLSGKQSDVFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLSIYEIENRTKVHSKFRYPFYNEMCWYVLERYVHCLTKRSYLAPEFHREPLLI
DLETKLSTESPSDSPSQDMDEEDSCETQQEREERSDRSAFDDPCSPDNRKGKPSAPQPLK
AALDDSCIPTSIQPPEFPKTPSGSPGSESQSKWTHLTEFELKGLKALVEKLEALPENKKC
VPDGMEDPQALLDDMKVVLKEHEDDDPKMAATGVPVVFWPKKSAKQQRPPNRPKPKMAAS
SPAPAVKLSASRSTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMR
QCIAPVLPHTAVCLVCGEAGKEDTVEEEEDKFNLMLMECSICNEIVHPLCLKVKNSGGVV
NEELPNCWECPKCNHAGKTGKAVKQKRGPGFKYASNLPGSLLKDSRLNRDVKEESDLPSV
PTSPTAVKRKVERDDTPKRKAEEYPPLKKRSPMLSLGGLPHPRPRPEDNPLRKKRKLFDI
KDEDEPPVVKKKKKPPKPDDTFTSKLLQPIKQEKVDEDEDHEDDRYTGDRVAAKGKREED
EDEEEEEEKDGVEDSKDGKVKTMLSPLLRTSAARESDQSCSSSPRAGPSSEGGDAPEKTL
GQLKAHQRRRLPNKELSKELSKELNLEIQKTEDCLANQNRRPLKGENSPTNNNRRPLKTE
DSINQNRRPLKTEDSPTNHNRRPIKTEDGLSNHNRRPLKTEDSLANQNHRPMKTEPESDG
EEHKPKRPLDNGSSDLGDWLHPRGREVNGTPRQLSPLGWNRSSPITPICPRPPPCHSPSK
CVQMERHVIRPPPISPPPDRLPLDDGQAHVMRREVWMVVFGHLAHRDLCVCMRVCKTWNR
WCCDKRLWTQIDLNRCKSITPLMLSGIIRRQPVALDLSWTNISKKQLSWLINRLPGLRML
LLSGCSWVAVSALCTASCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRSKLRN
VVDLRLAGLDITDTSLRLLIRYMPQLTRLDLSYCNHVTDQSVNILTAAGTTTRDSLTDIN
LSVCNRITDQSLTYFKRCGSICHIDLRYCKQVTKEGCEQFIAEMSVSVQFELVEEKLLLK
LS
NT seq 4149 nt   +upstreamnt  +downstreamnt
atggaagctggtgcagattctggacgcaagctgcgctccatctgccggacaatgtacgac
gaaaatgaggacttctctgacgttgaagaaattgcaaatgtcaggggttttaatctggag
gagaaacttgttagtaattcgtataacagacatttcgttcagttgatggacggcaaagat
ttcacttatgagtatgttcaaagagaagcacttcagacccctcttattttcaaagccaaa
gatggactggggctcagaatgccagacccggagttcaccgtcagtgagattaagggtttg
gttggtagccgtcgtgccgttgatgtgatggacgtaagcactcagaaaggctctgagatg
agcatggcccagtttgtccgctactatgagacgcctgaggaggagcgggacaaactcttt
aatgttatcagcctggagttcagtcacaccaaactggagaacctcgtcaagaggcccact
gtggtggatctagtggactgggtggacaacatgtggccccttaaactgaaacaaagacaa
actgaagccactaatgtcatctcagagatgaagtaccccaaagtacagaagtactgtttg
atgagcgtgaagggctgctatactgacttccacattgatttcgggggcacgtctgtgtgg
tatcacgttttcaagggaggaaaggtgttctggctggtgcctccgacacctcataacctt
gccctgtatgaggactgggttctgtcaggcaagcagagtgacgtcttccttggagatcgt
gcagatggctgccagagagttgagctaaaacagggttacaccttcttcatcccctccggc
tggattcatgcagtctacacccccgaggacacactggtgttcggtggcaacattctgcac
agctttaacattcccatgcaactctcaatctatgagatagagaacaggactaaggttcat
tccaagttccgctacccgttctacaatgagatgtgctggtatgtcctggagaggtacgtg
cactgcctgaccaagcgctcctatcttgctccggagtttcacagagagcctctgctaatc
gatttggagacgaagctgagcactgagagcccctctgactcgccaagtcaggacatggac
gaggaggactcctgcgagacgcagcaggaacgagaagaacggagtgacaggtcagcattt
gatgacccctgctctcctgataacaggaagggtaaacccagcgcccctcagcctctcaaa
gctgccttggacgatagctgcatccccacatccatccagcctccagagttccccaaaacc
ccctctggttcgccaggctcagagtctcagagtaaatggactcatttgactgagtttgaa
ctgaagggccttaaggccctggtggagaagttggaagcactccccgaaaataagaaatgt
gtcccagatggcatggaggacccccaggccctgctggatgacatgaaggttgtcttgaag
gaacatgaagatgatgatcccaaaatggctgccactggtgtacctgtggtgttctggccc
aagaagtctgccaagcagcagagacctcccaacaggcccaaacccaaaatggcggcctcg
tctcctgcgcctgcggtcaagctgtcggccagccggagcacgtctggggcccggagaagg
aggacgcgatgtcggaagtgtgaggcgtgcctgaggacagagtgtggagaatgccacttc
tgtaaagacatgaagaagtttggcgggccgggtcgcatgaaacagtcctgcatcatgagg
cagtgtatcgcgcctgtcctgccacacactgcggtgtgtctggtgtgtggggaggcaggg
aaggaggacacagtggaggaagaggaggacaaatttaacctcatgctcatggagtgctcc
atctgcaatgagatagtccatccactctgcctcaaggtgaagaattctggtggagttgta
aatgaagagttgccaaactgctgggagtgtccaaaatgcaaccatgcagggaagaccggg
aaagctgtcaagcaaaaaagaggaccaggattcaagtacgcgtccaaccttcccgggtcg
ctgctgaaggactcgcgattgaaccgtgacgttaaggaagagtccgacctgcccagtgtg
ccaacatcacccactgcagtgaagaggaaggtagagcgtgatgacacccccaagaggaaa
gcagaggaatatcctcctctgaagaaacgttctcccatgttgtctctgggcgggctacct
catccccgacccaggcctgaggacaaccctctgaggaagaagaggaagctgttcgacatc
aaagatgaggacgagcctcctgttgtcaagaaaaagaagaagcccccaaaacccgatgac
accttcacctccaagctgttacagcccatcaagcaagagaaagttgatgaggacgaagac
catgaagatgacagatacacaggggacagggttgcagctaaagggaaaagagaagaggat
gaagatgaggaggaagaagaggagaaagatggtgtagaggacagtaaagacggtaaagta
aagactatgctgagtccactgttacggacgtctgcagccagagagagtgaccagtcctgc
tccagctctccccgggcagggcccagcagtgaggggggcgatgccccagagaagacactt
ggccagctgaaggcacaccagcgacgccgcctacccaacaaagagctgagcaaggagctg
agcaaagagctcaacctggagatccagaagaccgaggactgcttggccaatcagaaccgc
agaccactgaagggggagaacagcccaaccaataacaaccgtcgaccactgaagactgag
gactctatcaatcagaaccgcagaccactaaaaacagaggactcccccaccaatcataac
cgcaggccaattaagactgaggatggcctatccaatcacaaccgtcgaccattgaagacc
gaggacagcttggccaatcagaaccacaggccaatgaagacagagcctgagagtgacggg
gaggagcataagcccaagcggccactcgacaacggcagcagtgacctcggagactggctc
caccccagggggcgggaggtgaacgggacgccccgccagctctcgcccctggggtggaac
cgcagctctccgatcacacctatttgcccacgcccccctccctgccactcaccgtccaag
tgtgtacagatggagcgtcacgtgatccggccgcctcccatcagccccccgccagacaga
cttcccctggatgacggacaggcccacgtgatgcgcagggaggtgtggatggtcgtgttc
ggccacctcgcacacagagacctgtgtgtctgcatgcgcgtctgcaagacctggaacaga
tggtgctgtgataagagactgtggacgcagatcgatctgaaccgctgtaagtccatcact
cccctcatgctgagtggcatcatccgcagacagcctgtggctctggacctcagctggacc
aacatctccaagaagcagctcagctggctcatcaacagactgccaggtctgcggatgctg
ctgctctcaggctgctcctgggtggctgtgtctgccctctgcaccgccagctgcccactg
ctgcggaccctggacgtccagtgggtagagggtctcaaagacgcccagatgagggatctg
ctctcaccccccacagacaacagaccaggtcagctggacaacaggagtaagctgcgaaat
gtggtggacctgcgtctggccgggctggacatcacggacacctctctgcgcctcctcatc
cgctacatgccccagctgaccagactggacctgagctactgcaaccatgttactgaccag
tcagtcaacatcctgactgctgcagggaccaccaccagagactcgctcactgacatcaac
ctctccgtgtgcaacagaatcacggaccagtccctgacctacttcaagcgctgtggaagc
atctgtcatattgacttgcgatactgcaagcaggtgaccaaagagggctgcgagcaattc
attgctgagatgtcagtgagtgtacagtttgaactagtagaggagaaactactgctgaaa
ctcagctag

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